PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG83972.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 672aa MW: 74072 Da PI: 9.2459

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG83972.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.3	2e-08	437	489	17	69
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 + ++++r k k+ +W++ sk+m+ g + ++ C +kw+nl ykki++ ++ GBG83972.1 437 TRQSYGRMKTKEWKWDDMSKRMANAGRPKDANDCMKKWDNLFHNYKKIQRFQN 489 456788999**************************************987655 PP

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence
MARNGSRWPT GRSAEGRAWA GGCPYWTVGS LARCGVGRRR AQDDKRSRFG QRGAATVDFQ 60 KEGRHVCHLL CWLSAYEGRA PLSQACRNTH LQWSRARAAA EVNFMADVQR RLPLLVLVVV 120 VFLIVVFLRL CLSWRPWKKQ RKRRASRRRA TGERLMAGMQ ARAATAAGQG GVRTSAAEPR 180 RRYDPSMYTH LESWETPLPP SDEEPEKEEL STLPLASGLT QLWSRTVRAG GSAPEEGGKF 240 TSLLHQGLRD DDGEGVDLRF GLCSGGSREA SRTFIIDGDR SARGLEHGGS LHTEQSTLRR 300 AAPVTGAVGP SPARRQHGST TPSVDRLTPT WPAPTGVAAG PLRMGGARSP MPACTTPIES 360 EVREQGTCRA AVRPRPAVEN ITRGVSNMWA HSDGGEDDGG FGDDADEGMR EDVEVGDDDD 420 NVAIRPLGKT GWEGERTRQS YGRMKTKEWK WDDMSKRMAN AGRPKDANDC MKKWDNLFHN 480 YKKIQRFQNA SGRADFFRLT NEERKEHNFK FRMDRALYNE IHAGMVGNHT IFPPNVTDTS 540 SPEGVQLPRR GAGGGESVCS EAAGEGCPEE RSSVRESDNN VGSGAGGGKR KNARQQALES 600 ISHVMDRHCA LMSSTIESSS KRQCSIFTRQ CDILEQEVAV QKAHYEASDE TQRMMCHALL 660 EIAAAIRGRS AM

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence

MARNGSRWPT GRSAEGRAWA GGCPYWTVGS LARCGVGRRR AQDDKRSRFG QRGAATVDFQ  60
KEGRHVCHLL CWLSAYEGRA PLSQACRNTH LQWSRARAAA EVNFMADVQR RLPLLVLVVV  120
VFLIVVFLRL CLSWRPWKKQ RKRRASRRRA TGERLMAGMQ ARAATAAGQG GVRTSAAEPR  180
RRYDPSMYTH LESWETPLPP SDEEPEKEEL STLPLASGLT QLWSRTVRAG GSAPEEGGKF  240
TSLLHQGLRD DDGEGVDLRF GLCSGGSREA SRTFIIDGDR SARGLEHGGS LHTEQSTLRR  300
AAPVTGAVGP SPARRQHGST TPSVDRLTPT WPAPTGVAAG PLRMGGARSP MPACTTPIES  360
EVREQGTCRA AVRPRPAVEN ITRGVSNMWA HSDGGEDDGG FGDDADEGMR EDVEVGDDDD  420
NVAIRPLGKT GWEGERTRQS YGRMKTKEWK WDDMSKRMAN AGRPKDANDC MKKWDNLFHN  480
YKKIQRFQNA SGRADFFRLT NEERKEHNFK FRMDRALYNE IHAGMVGNHT IFPPNVTDTS  540
SPEGVQLPRR GAGGGESVCS EAAGEGCPEE RSSVRESDNN VGSGAGGGKR KNARQQALES  600
ISHVMDRHCA LMSSTIESSS KRQCSIFTRQ CDILEQEVAV QKAHYEASDE TQRMMCHALL  660
EIAAAIRGRS AM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	8e-07	Trihelix family protein