PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG82594.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 634aa MW: 69269.5 Da PI: 6.6113

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG82594.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.3	4e-13	147	222	2	70
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ + + aLi+a+r+ + +l+ r k ++ +W +v+ ++++ g+ r++ +C +kw+nl +++kk+ + ++ GBG82594.1 147 WSVDDIIALIRAKRDQDAHLQgmghayaRMKPREWKWLDVATRLKKVGVDREADRCGKKWDNLMQQFKKVHHFQGL 222 99**********777766643333336789999********************************9887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence
MQSPSPLSAG SSAGHRAGEC RETAPAVAHV GDARDGREVW AEQRRLMRSV QEESITRGVQ 60 QLRVGEDGHD GEEAVGDAHD PDCNDNGAEG GEDGVGYISP SKQAAAMGGR GGKTKSCGGN 120 GRRGKRTTGK GNDAEGDVDG EGGRHFWSVD DIIALIRAKR DQDAHLQGMG HAYARMKPRE 180 WKWLDVATRL KKVGVDREAD RCGKKWDNLM QQFKKVHHFQ GLSGKQDFFQ LSGKDRMSKG 240 FSFNMDCAVY DEILGSTAKN HTINPENVAD TGAQGGVHQP FASSADPESV GDGDGGAEYD 300 DDDDGSTKGS SQTTGGAGGF GKRKSTRQQT FEAMTECMEK HGALMASTME SNNKRHCSIA 360 IRQCEEMEAE IEVQKKHYAA SDEVSKLMCH ALLEIAKAIG KRVKAGDVAG EGDDDDALVN 420 RLRQRNTREG MEAATKLWVD DLRFWNEREG FAIIRLIAEA RGYLVAVARG EQPPPIRRSI 480 VLPHNSIPHH KIVDESELNA AKERALKVQG IALRVIHDKH EDDGLAAYQE ASIQRLVGAF 540 TSAVIIAEAT DGGRVSHERL KTMADVIWMM LAATMWLMRM AGDDHRAHYD AWVFVQLTVK 600 PTLVTSMHRC FDARRHIVQA ATVITDKLAS PPSL

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence

MQSPSPLSAG SSAGHRAGEC RETAPAVAHV GDARDGREVW AEQRRLMRSV QEESITRGVQ  60
QLRVGEDGHD GEEAVGDAHD PDCNDNGAEG GEDGVGYISP SKQAAAMGGR GGKTKSCGGN  120
GRRGKRTTGK GNDAEGDVDG EGGRHFWSVD DIIALIRAKR DQDAHLQGMG HAYARMKPRE  180
WKWLDVATRL KKVGVDREAD RCGKKWDNLM QQFKKVHHFQ GLSGKQDFFQ LSGKDRMSKG  240
FSFNMDCAVY DEILGSTAKN HTINPENVAD TGAQGGVHQP FASSADPESV GDGDGGAEYD  300
DDDDGSTKGS SQTTGGAGGF GKRKSTRQQT FEAMTECMEK HGALMASTME SNNKRHCSIA  360
IRQCEEMEAE IEVQKKHYAA SDEVSKLMCH ALLEIAKAIG KRVKAGDVAG EGDDDDALVN  420
RLRQRNTREG MEAATKLWVD DLRFWNEREG FAIIRLIAEA RGYLVAVARG EQPPPIRRSI  480
VLPHNSIPHH KIVDESELNA AKERALKVQG IALRVIHDKH EDDGLAAYQE ASIQRLVGAF  540
TSAVIIAEAT DGGRVSHERL KTMADVIWMM LAATMWLMRM AGDDHRAHYD AWVFVQLTVK  600
PTLVTSMHRC FDARRHIVQA ATVITDKLAS PPSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-09	Trihelix family protein