PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG82152.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 620aa MW: 67548.1 Da PI: 6.6478

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG82152.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.6	1.2e-11	358	409	18	69
trihelix 18 eerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 e l+r++lk++ W++v ++m+ +gf+r++ qCk+k++ l +y+++k +e+ GBG82152.1 358 TEPLGRARLKAGFWKDVEQRMKGKGFNRNAHQCKNKFNTLLDYYRRLKVHEG 409 45567899***************************************98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence
MLSRESPFLS ISRLCSLSSC TINLLNAEDD EQPSMSQYSQ HAGLSSIEDW GYSETQNEAP 60 PAACIGSSSQ VVGQQQQCFT HDGCQSQCPI GDNVGTNVGV PKGDVQRPHT SSTFLFGGPA 120 WSGGPVRSPD NAHVIGPMTD VPRASVVTGH RQLSSPVSPV GGFQIGLREE DEVTLRQHLR 180 MRAMAMSDGL SLSPDERDIN GIMTSPARNG GSRHGSPGPS TVSSVDNDTM GCRSSHLPAA 240 LSAIPHASFP LSPDPFRRDG SPQPHRPRTG SLEYVINRII RANEAGVPPV DCPTNTTLGG 300 EAVVDPTAPW RTPPPRVPFE GLNSPSPVTA QSTSQHTPCN VENLAGTNEV KSLMGEETEP 360 LGRARLKAGF WKDVEQRMKG KGFNRNAHQC KNKFNTLLDY YRRLKVHEGW SGLPSYWDMN 420 QTRRKKYNID FVLRRAWYDI IHPVGKDKDS IYLTNLMDSG ADEERLEDSE RCNDIDGETE 480 GGSEDPAVGS ASSLGLGSSQ GGRRSTGFDP MLSKRRRTAI NARELSMQTV TSATCDHTAA 540 LTCSDRECMK ICCEATRDIA RHQAEAHREL MQQDIPSRER IATITGDGVE KGYLVLADAI 600 RSLRPRRNSP SSRPDSSDSR

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence

MLSRESPFLS ISRLCSLSSC TINLLNAEDD EQPSMSQYSQ HAGLSSIEDW GYSETQNEAP  60
PAACIGSSSQ VVGQQQQCFT HDGCQSQCPI GDNVGTNVGV PKGDVQRPHT SSTFLFGGPA  120
WSGGPVRSPD NAHVIGPMTD VPRASVVTGH RQLSSPVSPV GGFQIGLREE DEVTLRQHLR  180
MRAMAMSDGL SLSPDERDIN GIMTSPARNG GSRHGSPGPS TVSSVDNDTM GCRSSHLPAA  240
LSAIPHASFP LSPDPFRRDG SPQPHRPRTG SLEYVINRII RANEAGVPPV DCPTNTTLGG  300
EAVVDPTAPW RTPPPRVPFE GLNSPSPVTA QSTSQHTPCN VENLAGTNEV KSLMGEETEP  360
LGRARLKAGF WKDVEQRMKG KGFNRNAHQC KNKFNTLLDY YRRLKVHEGW SGLPSYWDMN  420
QTRRKKYNID FVLRRAWYDI IHPVGKDKDS IYLTNLMDSG ADEERLEDSE RCNDIDGETE  480
GGSEDPAVGS ASSLGLGSSQ GGRRSTGFDP MLSKRRRTAI NARELSMQTV TSATCDHTAA  540
LTCSDRECMK ICCEATRDIA RHQAEAHREL MQQDIPSRER IATITGDGVE KGYLVLADAI  600
RSLRPRRNSP SSRPDSSDSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-06	Trihelix family protein