PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG81187.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1063aa MW: 117397 Da PI: 8.1717

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG81187.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.6	8e-14	577	648	2	66
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 W+ +++ aLi+a+r+ + +++ r k ++ +W++v+++++ g+ r++++C +kw+nl +++kk+ + GBG81187.1 577 WSVEHIIALIRAKRDQDAHMQgmghayaRMKPREWKWQDVAQRLKNVGVDRNAEKCGKKWDNLMQQFKKVHH 648 9***********7777777444333367899**********************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1063 aa Download sequence
MECIGCRESW LGGFTANLEL DFSSSSSCSQ RSACRELDGR ILFRSRKLGR IGYGGYGGFC 60 LRRWKLSSSS SLAAMGERSW ENRRRSPARH YMGGRRREWE DGDGGDVRER ERIEWPMHVD 120 RISSVTNHFV RQCVRLRQSR SYRNERGVVL VVGRIPLRKV GPKHSAIQSS HGARTLKTSM 180 PSKLWQDNEH CAPLLCWRPR CLLFAAVVVD CFMADVFRRL LLLILVVLLL LLVLLFRVCI 240 LGNVPPRQRK RRSSMKDARM EARQAIPRSG GEQVGGRRCG GSLSTVGRAS QRVGYDALPP 300 HLQPLPGSSD EEEVVERRPQ TVSLGSGSTQ EWTATELCGT SGDMYEQSFT ELLRPGLGED 360 EGDGRVNLSF GLSTRRSTTP SRTVLVRPHP DDEGGQLTVV DRSARTRALA SETAGTNRNS 420 SMPQPRAASL SKGAQGRGIG VDGGTDFLDV GNGRDGREVW RDLRRDHRLR REEYITRGVE 480 RLHVGDRENE NETDDPPAEA DDDYDDDDDD DNDDDNDVEC GEGGSGHASP SLQSDMAGKG 540 GKSKPSGRNA RPRAKKGQGK GSGGEGDGDA EEKRNFWSVE HIIALIRAKR DQDAHMQGMG 600 HAYARMKPRE WKWQDVAQRL KNVGVDRNAE KCGKKWDNLM QQFKKVHHFQ SPSGGADFFQ 660 LTSKERASRG FNFTMDRAVY DEIEGSTGMN HTIHPKNVAD TGESGGVRPP STSYVDPESV 720 ADGEGGAGRE DDEEGSTRGS LQTTGTPGGS GKRKSTRQQT FEALTECMEK HDELMPSTME 780 SASKRQCSIQ EGATSHETAQ RVLAPLNRPR TPAANVAGSS HAAVEGGTLR SPAVVARGGA 840 VAVSGEAVEV PKGGGGAAAG EDDEALVHRL RGQRAATHAM DAAAKLWEDD NRFWNDTQGS 900 AIVRIIQEAR AYLVAVARRV QPPAIRRSIS LPHNSIPQHK IEDESELNAA KERALKVQTI 960 SLRAIHGWVF KSESWQRGYH LAYQYALNHA ATDIARAMWS AEDWRSLVSP MLFRTTLDVD 1020 MKLPLWFVGV NIVDRHEDDE CGISQAQLAR QKLWTAVECR TSV

Sequence ? help Back to Top

Protein Sequence Length: 1063 aa Download sequence

MECIGCRESW LGGFTANLEL DFSSSSSCSQ RSACRELDGR ILFRSRKLGR IGYGGYGGFC  60
LRRWKLSSSS SLAAMGERSW ENRRRSPARH YMGGRRREWE DGDGGDVRER ERIEWPMHVD  120
RISSVTNHFV RQCVRLRQSR SYRNERGVVL VVGRIPLRKV GPKHSAIQSS HGARTLKTSM  180
PSKLWQDNEH CAPLLCWRPR CLLFAAVVVD CFMADVFRRL LLLILVVLLL LLVLLFRVCI  240
LGNVPPRQRK RRSSMKDARM EARQAIPRSG GEQVGGRRCG GSLSTVGRAS QRVGYDALPP  300
HLQPLPGSSD EEEVVERRPQ TVSLGSGSTQ EWTATELCGT SGDMYEQSFT ELLRPGLGED  360
EGDGRVNLSF GLSTRRSTTP SRTVLVRPHP DDEGGQLTVV DRSARTRALA SETAGTNRNS  420
SMPQPRAASL SKGAQGRGIG VDGGTDFLDV GNGRDGREVW RDLRRDHRLR REEYITRGVE  480
RLHVGDRENE NETDDPPAEA DDDYDDDDDD DNDDDNDVEC GEGGSGHASP SLQSDMAGKG  540
GKSKPSGRNA RPRAKKGQGK GSGGEGDGDA EEKRNFWSVE HIIALIRAKR DQDAHMQGMG  600
HAYARMKPRE WKWQDVAQRL KNVGVDRNAE KCGKKWDNLM QQFKKVHHFQ SPSGGADFFQ  660
LTSKERASRG FNFTMDRAVY DEIEGSTGMN HTIHPKNVAD TGESGGVRPP STSYVDPESV  720
ADGEGGAGRE DDEEGSTRGS LQTTGTPGGS GKRKSTRQQT FEALTECMEK HDELMPSTME  780
SASKRQCSIQ EGATSHETAQ RVLAPLNRPR TPAANVAGSS HAAVEGGTLR SPAVVARGGA  840
VAVSGEAVEV PKGGGGAAAG EDDEALVHRL RGQRAATHAM DAAAKLWEDD NRFWNDTQGS  900
AIVRIIQEAR AYLVAVARRV QPPAIRRSIS LPHNSIPQHK IEDESELNAA KERALKVQTI  960
SLRAIHGWVF KSESWQRGYH LAYQYALNHA ATDIARAMWS AEDWRSLVSP MLFRTTLDVD  1020
MKLPLWFVGV NIVDRHEDDE CGISQAQLAR QKLWTAVECR TSV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	248	253	QRKRRS
2	550	558	ARPRAKKGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-09	Trihelix family protein