PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG81186.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1250aa MW: 136866 Da PI: 6.8958

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG81186.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.3	9.7e-14	764	835	2	66
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 W+ +++ aLi+a+r+ + +++ r k ++ +W++v+++++ g+ r++++C +kw+nl +++kk+ + GBG81186.1 764 WSVEHIIALIRAKRDQDAHMQgmghayaRMKPREWKWQDVAQRLKNVGVDRNAEKCGKKWDNLMQQFKKVHH 835 9***********7777777444333367899**********************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1250 aa Download sequence
MECIGCRESW LGGFTANLEL DFSSSSSCSQ RSACRELDGR ILFRSRKLGR IGYGGYGGFC 60 LRRWKLSSSS SLAAMGERSW ENRRRSPARH YMGGRRREWE DGDGGDVRER ERIEWPMHVD 120 RISSVTNHFV RQCVRLRQSR SYRNERGVVL VVGRIPLSEI ISAWGQDGED GELKGGGVEI 180 EVLMLLEGLP MPEDMPARQT VYVTPSVMRK LSGVESAEGV EMVAILRKPA SFTAFGPATI 240 SSFDKAERWC PSANRLLALD GVQDPGNLGT LLRTAAALGW DGVFLLPGCC DPFNEKAIRA 300 SRGAAFHIPV AVGDWSQLRA MLSRRRVACY SGEPHQPLTS SSMRSSPDAM RKKIDRASLE 360 DCVCLILGSE GQGLSQEARE VSQPLAVPME GHLESLNVAV AGGILMLLLL ILVVLLLLLV 420 LLFRVCILGN VPPRQRKRRS SMKDARMEAR QAIPRSGGEQ VGGRRCGGSL STVGRASQRV 480 GYDALPPHLQ PLPGSSDEEE VVERRPQTVS LGSGSTQEWT ATELCGTSGD MYEQSFTELL 540 RPGLGEDEGD GRVNLSFGLS TRRSTTPSRT VLVRPHPDDE GGQLTVVDRS ARTRALASET 600 AGTNRNSSMP QPRAASLSKG AQGRGIGVDG GTDFLDVGNG RDGREVWRDL RRDHRLRREE 660 YITRGVERLH VGDRENENET DDPPAEADDD YDDDDDDDND DDNDVECGEG GSGHASPSLQ 720 SDMAGKGGKS KPSGRNARPR AKKGQGKGSG GEGDGDAEEK RNFWSVEHII ALIRAKRDQD 780 AHMQGMGHAY ARMKPREWKW QDVAQRLKNV GVDRNAEKCG KKWDNLMQQF KKVHHFQSPS 840 GGADFFQLTS KERASRGFNF TMDRAVYDEI EGSTGMNHTI HPKNVADTGE SGGVRPPSTS 900 YVDPESVADG EGGAGREDDE EGSTRGSLQT TGTPGGSGKR KSTRQQTFEA LTECMEKHDE 960 LMPSTMESAS KRQCSIQEGA TSHETAQRVL APLNRPRTPA ANVAGSSHAA VEGGTLRSPA 1020 VVARGGAVAV SGEAVEVPKG GGGAAAGEDD EALVHRLRGQ RAATHAMDAA AKLWEDDNRF 1080 WNDTQGSAIV RIIQEARAYL VAVARRVQPP AIRRSISLPH NSIPQHKIED ESELNAAKER 1140 ALKVQTISLR AIHGWVFKSE SWQRGYHLAY QYALNHAATD IARAMWSAED WRSLVSPMLF 1200 RTTLDVDMKL PLWFVGVNIV DRHEDDECGI SQAQLARQKL WTAVECRTSV

Sequence ? help Back to Top

Protein Sequence Length: 1250 aa Download sequence

MECIGCRESW LGGFTANLEL DFSSSSSCSQ RSACRELDGR ILFRSRKLGR IGYGGYGGFC  60
LRRWKLSSSS SLAAMGERSW ENRRRSPARH YMGGRRREWE DGDGGDVRER ERIEWPMHVD  120
RISSVTNHFV RQCVRLRQSR SYRNERGVVL VVGRIPLSEI ISAWGQDGED GELKGGGVEI  180
EVLMLLEGLP MPEDMPARQT VYVTPSVMRK LSGVESAEGV EMVAILRKPA SFTAFGPATI  240
SSFDKAERWC PSANRLLALD GVQDPGNLGT LLRTAAALGW DGVFLLPGCC DPFNEKAIRA  300
SRGAAFHIPV AVGDWSQLRA MLSRRRVACY SGEPHQPLTS SSMRSSPDAM RKKIDRASLE  360
DCVCLILGSE GQGLSQEARE VSQPLAVPME GHLESLNVAV AGGILMLLLL ILVVLLLLLV  420
LLFRVCILGN VPPRQRKRRS SMKDARMEAR QAIPRSGGEQ VGGRRCGGSL STVGRASQRV  480
GYDALPPHLQ PLPGSSDEEE VVERRPQTVS LGSGSTQEWT ATELCGTSGD MYEQSFTELL  540
RPGLGEDEGD GRVNLSFGLS TRRSTTPSRT VLVRPHPDDE GGQLTVVDRS ARTRALASET  600
AGTNRNSSMP QPRAASLSKG AQGRGIGVDG GTDFLDVGNG RDGREVWRDL RRDHRLRREE  660
YITRGVERLH VGDRENENET DDPPAEADDD YDDDDDDDND DDNDVECGEG GSGHASPSLQ  720
SDMAGKGGKS KPSGRNARPR AKKGQGKGSG GEGDGDAEEK RNFWSVEHII ALIRAKRDQD  780
AHMQGMGHAY ARMKPREWKW QDVAQRLKNV GVDRNAEKCG KKWDNLMQQF KKVHHFQSPS  840
GGADFFQLTS KERASRGFNF TMDRAVYDEI EGSTGMNHTI HPKNVADTGE SGGVRPPSTS  900
YVDPESVADG EGGAGREDDE EGSTRGSLQT TGTPGGSGKR KSTRQQTFEA LTECMEKHDE  960
LMPSTMESAS KRQCSIQEGA TSHETAQRVL APLNRPRTPA ANVAGSSHAA VEGGTLRSPA  1020
VVARGGAVAV SGEAVEVPKG GGGAAAGEDD EALVHRLRGQ RAATHAMDAA AKLWEDDNRF  1080
WNDTQGSAIV RIIQEARAYL VAVARRVQPP AIRRSISLPH NSIPQHKIED ESELNAAKER  1140
ALKVQTISLR AIHGWVFKSE SWQRGYHLAY QYALNHAATD IARAMWSAED WRSLVSPMLF  1200
RTTLDVDMKL PLWFVGVNIV DRHEDDECGI SQAQLARQKL WTAVECRTSV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	435	440	QRKRRS
2	737	745	ARPRAKKGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	5e-09	Trihelix family protein