PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG80925.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1258aa MW: 137879 Da PI: 7.2602

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG80925.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.4	9e-09	433	507	2	69
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 W + ++L++ +r ++ ++++r k k+ +We+ sk+m+ g + C +kw+nl + ykki++ ++ GBG80925.1 433 WFAEDQMLLVRCKReqdmhlaNLSHNYGRMKTKEWKWEDMSKRMANAGRPKDDDDCMKKWDNLFQNYKKIQRFQN 507 6666677778888844444444555666789**************************************987655 PP

Sequence ? help Back to Top
Protein Sequence Length: 1258 aa Download sequence
MRSGTSTCAG RQTEPLQAAR TATVEFQKEG GRVRRLLWWL SAYEGRAPLS WACRNTHLQW 60 SRARAAAEVN FMADVRRRLP LLVLAVVVFL IFVFLYVCFS WRPSKQQRKR RASTRRAAGE 120 RLMAGMQARP AAAAGQGGVR SSAAEPRRRY VPSMYTHLES WDTPLPPSDE EPEKEELSTL 180 PLASVSTQLW SQMVRAGGSA PDEGGEFTSL LHQGLRDDDD RGVDLRFELC SGGGREASCT 240 FIIDGDRSAR GVEHGGSLHT EQSTLRRAAP MTGAAGPLPV GRQHGSTAPS VDRLTPTWPA 300 PSGVAAGPLR MGGARSLMPA CTTPVESGVR DEGTCRAPVR PRPIVENITH GVSNMRAHSD 360 GGEDDVGFGD DADEGMREDV EAGDDDDEVP IRPLGKTTGR GKGRGRGGVR GRSVGRGGRG 420 GVSDDAGKSP TYWFAEDQML LVRCKREQDM HLANLSHNYG RMKTKEWKWE DMSKRMANAG 480 RPKDDDDCMK KWDNLFQNYK KIQRFQNASG RPDFFRLTNE ERKEHNFKFR MDRALYNEIH 540 ASMVGNHTIF PPNVADTGSP DGVQLPRRGA GGGESVCSEA AGEGCPDERS SARESDSNVG 600 SGAGGGKRKN ARQQAFESIS DVMERHGALM SSTIESSSKR QCRIFTRQCD ILEQEVAVQK 660 AHYEASDETQ RMMCQALLEI AAAIRGRSAI RVLHRDHLWG SPASMSARLN ACGKKRDVAL 720 DETQAQGKGR RHVPKAKRPR LDDASARVPH RGARGWSQPA EEDNDDDFMT EDDQCEATTS 780 AGRESARQRT PDQSTSKRMS TPPPEAQQLR VRETWKEKGV VVDLGSEDDE PLERRRLRSA 840 TQATTTAVST ARAADDERPI TGALPCTSSQ PRQRNDGGDG ASCQRGGGGG VVADARAAGG 900 EAAGGAGVAV AGVVPPVPSA REEAAVPVTV REEGRGQNTN QRDGGEAVSS RARRGVMTNE 960 LIDRALLWVD DKCFWTTGEG RRLYNIVHET KEYFVAIASG LPPPQLPRSV VVPKSSTRVA 1020 RIADQSQLQQ VISRAVAVEN IALRILHDIA RAMWYGEEWR NVVGAPICAH TIDLNMDLPL 1080 WYADVNIEDR PEDDDMAAYQ ESTVISIAHS FCSAVQMGAH IDDDFISYER LCRVADCFRL 1140 LLAASMWIMR MAGDDPRSHY EAFYFADLVA RPTLIASMHR SFDHRRSVVR AVNVVTERLG 1200 KAKVTLGVYH DYIPDWAPCG IGFAHDATIK GPEDAKRLDW LGSGPADDDI KGEGKDDA

Sequence ? help Back to Top

Protein Sequence Length: 1258 aa Download sequence

MRSGTSTCAG RQTEPLQAAR TATVEFQKEG GRVRRLLWWL SAYEGRAPLS WACRNTHLQW  60
SRARAAAEVN FMADVRRRLP LLVLAVVVFL IFVFLYVCFS WRPSKQQRKR RASTRRAAGE  120
RLMAGMQARP AAAAGQGGVR SSAAEPRRRY VPSMYTHLES WDTPLPPSDE EPEKEELSTL  180
PLASVSTQLW SQMVRAGGSA PDEGGEFTSL LHQGLRDDDD RGVDLRFELC SGGGREASCT  240
FIIDGDRSAR GVEHGGSLHT EQSTLRRAAP MTGAAGPLPV GRQHGSTAPS VDRLTPTWPA  300
PSGVAAGPLR MGGARSLMPA CTTPVESGVR DEGTCRAPVR PRPIVENITH GVSNMRAHSD  360
GGEDDVGFGD DADEGMREDV EAGDDDDEVP IRPLGKTTGR GKGRGRGGVR GRSVGRGGRG  420
GVSDDAGKSP TYWFAEDQML LVRCKREQDM HLANLSHNYG RMKTKEWKWE DMSKRMANAG  480
RPKDDDDCMK KWDNLFQNYK KIQRFQNASG RPDFFRLTNE ERKEHNFKFR MDRALYNEIH  540
ASMVGNHTIF PPNVADTGSP DGVQLPRRGA GGGESVCSEA AGEGCPDERS SARESDSNVG  600
SGAGGGKRKN ARQQAFESIS DVMERHGALM SSTIESSSKR QCRIFTRQCD ILEQEVAVQK  660
AHYEASDETQ RMMCQALLEI AAAIRGRSAI RVLHRDHLWG SPASMSARLN ACGKKRDVAL  720
DETQAQGKGR RHVPKAKRPR LDDASARVPH RGARGWSQPA EEDNDDDFMT EDDQCEATTS  780
AGRESARQRT PDQSTSKRMS TPPPEAQQLR VRETWKEKGV VVDLGSEDDE PLERRRLRSA  840
TQATTTAVST ARAADDERPI TGALPCTSSQ PRQRNDGGDG ASCQRGGGGG VVADARAAGG  900
EAAGGAGVAV AGVVPPVPSA REEAAVPVTV REEGRGQNTN QRDGGEAVSS RARRGVMTNE  960
LIDRALLWVD DKCFWTTGEG RRLYNIVHET KEYFVAIASG LPPPQLPRSV VVPKSSTRVA  1020
RIADQSQLQQ VISRAVAVEN IALRILHDIA RAMWYGEEWR NVVGAPICAH TIDLNMDLPL  1080
WYADVNIEDR PEDDDMAAYQ ESTVISIAHS FCSAVQMGAH IDDDFISYER LCRVADCFRL  1140
LLAASMWIMR MAGDDPRSHY EAFYFADLVA RPTLIASMHR SFDHRRSVVR AVNVVTERLG  1200
KAKVTLGVYH DYIPDWAPCG IGFAHDATIK GPEDAKRLDW LGSGPADDDI KGEGKDDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	4e-07	Trihelix family protein