PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GBG80347.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
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Family | Trihelix | ||||||||
Protein Properties | Length: 256aa MW: 28285.7 Da PI: 10.0716 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 38 | 4.3e-12 | 41 | 116 | 2 | 70 |
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ +++ aLi+ + m++++ r k ++ +W + +++m++ g+ r + +C +kw+nl +++kk+ + ++ GBG80347.1 41 WSVDHIGALIRSKCnqdahmqGMGHTYARMKPREWKWLDMAQRMKKVGVDRDADKCGKKWDNLMQQFKKVHHFNGL 116 9999*******999444444444455557789999**********************************9988765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence |
MGGRGGKTKS SVRNGRRGKN AAGKGNDADG DGDVEGGRHF WSVDHIGALI RSKCNQDAHM 60 QGMGHTYARM KPREWKWLDM AQRMKKVGVD RDADKCGKKW DNLMQQFKKV HHFNGLYGKQ 120 DFFQLPTKER TSKGFNFNMD REVYDEILGS TGTNHTIHPK NVADTGASIG VRLPSTSSAE 180 LESVGDGDAG AGQDDDHDGS TKSSSQTTGS PSGFAKRKSM RQHIFEAMTA CMEKHRALMA 240 SMMESVNKRQ CSIQIR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 1e-07 | Trihelix family protein |