PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG77638.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C3H

Protein Properties

Length: 1957aa MW: 207583 Da PI: 5.8002

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG77638.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.6	8.8e-13	1892	1917	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte+C+ + + G C+yG rC+FaHg GBG77638.1 1892 YKTEICNKWEKLGVCPYGKRCQFAHG 1917 9************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1957 aa Download sequence
MTRTDAPHHD DPAEDWSASQ LFGDRERDDD NLREKSFGHG HRNRETNMQN SESDAAMGSR 60 HGTAAATASA STTAQEEEHD AVGGDVNRRS DLIRILHLQA PAHDCAKSGD SGKLLAEGVA 120 SWVLPSSPAD WKEDWVPETS VRDPLHNLDM PACFLPAESQ APLSQRQSVT LHSPSGNPRG 180 PQPPLSSQST LLTSTPTLSW DCARAVSSSF RLSSPESSSS FPSKRSSSST MSPLSCSSPR 240 TSATVYDRLG SSSSLAAAGS HRCGGVAAIT IDAVGGEAAP SGSPSNIKSA PPVLPSLGIW 300 ERTVAMGSDR MQGSGEQGNH GADKRSLPSS PPVTQKVESD VYGSSSRPFY DYDERDVQPW 360 ELDWTFPSAE PTARNPLTSP PPWPEASTAD RFPSDAADRG MSSFPLDMRC YHNCWARSDS 420 RPNWKLADGQ LEGGGYTGHR VSDELHVSRA IADDEVHPGA ELAAGVGAEA ATEVRKTAKR 480 SEVEQQLATG NAMAEGEEGT RTRPAAGAEL RAEAGIETTM ATTMQSGSAS EPGRGPARAR 540 RGEMVRGPLT GASGSRLTGG VLFRSSESTS KEVQGRLDWQ RRQWSDIESD AGQVDNPGQG 600 GGHAAADYDE EQDGHSARND DCEGEGRRMA AAAACYLISL AGVDDHEREE NFNPSQGARF 660 EESVEGNANG NNGRTDDDET HGNFCFGERT GLPQDNRVCV DPSIAETTDN LLLSYTRCLF 720 KTGQRMRLNG ASTGATPPYV PRSMTESIQL SDGDRGQGHH QPSTADVQSS MGNWGCVRAD 780 VPLDSELELS GGDNESLLFS LAGADRHRLL VGMPSSSSSS SSSSSSSSCQ SMPWIELTAT 840 MTPHRNDNGL LPEHDGERSG DQDSTYCWSS QACRSALSTG NNGYADWERS GGRNHFFNLT 900 YEERTSAACR STNDSHHLYT GDTTSQVHPA AEAQGQRGQL QDEANSRDRS TVNIFNPASP 960 EPTGILEKAW RGSNSPFLHP QQRIASTSSQ GAPPPGDRHA WAPSVLQSRV ELNIPDQLVG 1020 VDCHYPRAQS ELLNCLADPH DRSFQHGEDL STSSPTHFSA EEYGYGYEYA HHHAHDCEDY 1080 AHAHRQSFRS SVHPPSGVGK GFDMTEDRST SGWRSWFATS GSDVLERKQI GEDGVLLQEP 1140 WLHPTMESAA PGPSALWGGV HSFDEAARRS SPPSSALVMN GEREVPKPLH TRRMTSSATG 1200 ILGFPTSSAT RGRCSPGPEG NSAHWQPIVT AWEVGLRPAV PAAATGGTSA ALLPSCTTPT 1260 LPSAIPVHVP RGGVSFEGAG SFACGASNSQ PFAGAPMRNS QLPLPFLSRC GVTPDEPSSS 1320 SRQPNRWQSC PLRPPPAKTP AVLQFAVQRP SSPGALLPPP SSSQGTTGDK VSGCRSQTSQ 1380 LRGGGRGAAE VAKGGGALLA TRSMTRPPGG GVDDERHDEM GSALTDRETT STAAKGPAGR 1440 RYRRERLARR GSSCGSSKLT TALSTIAASA IAVSMLPKSI SVIAPPASLR QRAKPGGRLT 1500 LSLVDQGPLT LAPDSSAKRD GTLTLQTTLT NKGSDGDGPR KLQLSCDTAA TVDIQKAHGQ 1560 HLQSAIGRLT ARERKSTRVG EHASDSQNLD SSGTDSLDAQ SDDSCPKRDE AWKCEGTAGR 1620 SAAGDDEEVD LEESGSGRPC GAERPALRHP SRSSTSSGDV QEESSPDVGK RCGGLGPDAC 1680 PAGSTSDAQP YEMDSKSQAT GTNEDGQDVS ALKGEWSSCC EASAQRNRLD VVETAGAPLP 1740 QVVASAQVTG LLSVDDYVRT SASMNELDQE SLATTPTKLE AEMGITMTEC QQHEQGTRQR 1800 RSRSSSALSS EVSHFNNGRV DAPADNAEGL NTLEGSTAGR QRRGEGGRGA RGGRGKAAGS 1860 TGGNGCPPAA TAIISTESGE VGECAVFTQG TYKTEICNKW EKLGVCPYGK RCQFAHGVNE 1920 LRPVLRHPRY KTEVCRMIAA GQSCPYGHRC HFSHTIT

Sequence ? help Back to Top

Protein Sequence Length: 1957 aa Download sequence

MTRTDAPHHD DPAEDWSASQ LFGDRERDDD NLREKSFGHG HRNRETNMQN SESDAAMGSR  60
HGTAAATASA STTAQEEEHD AVGGDVNRRS DLIRILHLQA PAHDCAKSGD SGKLLAEGVA  120
SWVLPSSPAD WKEDWVPETS VRDPLHNLDM PACFLPAESQ APLSQRQSVT LHSPSGNPRG  180
PQPPLSSQST LLTSTPTLSW DCARAVSSSF RLSSPESSSS FPSKRSSSST MSPLSCSSPR  240
TSATVYDRLG SSSSLAAAGS HRCGGVAAIT IDAVGGEAAP SGSPSNIKSA PPVLPSLGIW  300
ERTVAMGSDR MQGSGEQGNH GADKRSLPSS PPVTQKVESD VYGSSSRPFY DYDERDVQPW  360
ELDWTFPSAE PTARNPLTSP PPWPEASTAD RFPSDAADRG MSSFPLDMRC YHNCWARSDS  420
RPNWKLADGQ LEGGGYTGHR VSDELHVSRA IADDEVHPGA ELAAGVGAEA ATEVRKTAKR  480
SEVEQQLATG NAMAEGEEGT RTRPAAGAEL RAEAGIETTM ATTMQSGSAS EPGRGPARAR  540
RGEMVRGPLT GASGSRLTGG VLFRSSESTS KEVQGRLDWQ RRQWSDIESD AGQVDNPGQG  600
GGHAAADYDE EQDGHSARND DCEGEGRRMA AAAACYLISL AGVDDHEREE NFNPSQGARF  660
EESVEGNANG NNGRTDDDET HGNFCFGERT GLPQDNRVCV DPSIAETTDN LLLSYTRCLF  720
KTGQRMRLNG ASTGATPPYV PRSMTESIQL SDGDRGQGHH QPSTADVQSS MGNWGCVRAD  780
VPLDSELELS GGDNESLLFS LAGADRHRLL VGMPSSSSSS SSSSSSSSCQ SMPWIELTAT  840
MTPHRNDNGL LPEHDGERSG DQDSTYCWSS QACRSALSTG NNGYADWERS GGRNHFFNLT  900
YEERTSAACR STNDSHHLYT GDTTSQVHPA AEAQGQRGQL QDEANSRDRS TVNIFNPASP  960
EPTGILEKAW RGSNSPFLHP QQRIASTSSQ GAPPPGDRHA WAPSVLQSRV ELNIPDQLVG  1020
VDCHYPRAQS ELLNCLADPH DRSFQHGEDL STSSPTHFSA EEYGYGYEYA HHHAHDCEDY  1080
AHAHRQSFRS SVHPPSGVGK GFDMTEDRST SGWRSWFATS GSDVLERKQI GEDGVLLQEP  1140
WLHPTMESAA PGPSALWGGV HSFDEAARRS SPPSSALVMN GEREVPKPLH TRRMTSSATG  1200
ILGFPTSSAT RGRCSPGPEG NSAHWQPIVT AWEVGLRPAV PAAATGGTSA ALLPSCTTPT  1260
LPSAIPVHVP RGGVSFEGAG SFACGASNSQ PFAGAPMRNS QLPLPFLSRC GVTPDEPSSS  1320
SRQPNRWQSC PLRPPPAKTP AVLQFAVQRP SSPGALLPPP SSSQGTTGDK VSGCRSQTSQ  1380
LRGGGRGAAE VAKGGGALLA TRSMTRPPGG GVDDERHDEM GSALTDRETT STAAKGPAGR  1440
RYRRERLARR GSSCGSSKLT TALSTIAASA IAVSMLPKSI SVIAPPASLR QRAKPGGRLT  1500
LSLVDQGPLT LAPDSSAKRD GTLTLQTTLT NKGSDGDGPR KLQLSCDTAA TVDIQKAHGQ  1560
HLQSAIGRLT ARERKSTRVG EHASDSQNLD SSGTDSLDAQ SDDSCPKRDE AWKCEGTAGR  1620
SAAGDDEEVD LEESGSGRPC GAERPALRHP SRSSTSSGDV QEESSPDVGK RCGGLGPDAC  1680
PAGSTSDAQP YEMDSKSQAT GTNEDGQDVS ALKGEWSSCC EASAQRNRLD VVETAGAPLP  1740
QVVASAQVTG LLSVDDYVRT SASMNELDQE SLATTPTKLE AEMGITMTEC QQHEQGTRQR  1800
RSRSSSALSS EVSHFNNGRV DAPADNAEGL NTLEGSTAGR QRRGEGGRGA RGGRGKAAGS  1860
TGGNGCPPAA TAIISTESGE VGECAVFTQG TYKTEICNKW EKLGVCPYGK RCQFAHGVNE  1920
LRPVLRHPRY KTEVCRMIAA GQSCPYGHRC HFSHTIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	4e-35	C3H family protein