PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG77208.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C3H

Protein Properties

Length: 891aa MW: 86002.7 Da PI: 8.3036

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG77208.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	6.7e-07	237	262	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC f+ C+y d C+FaHg GBG77208.1 237 FKTRLCAKFMSDRMCPYSDGCSFAHG 262 69***********************8 PP
2	zf-CCCH	28	3.7e-09	322	346	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k + C+ f++ G C+yG+rC+F H+ GBG77208.1 322 KLRACMKFMKEGSCPYGERCCFWHD 346 5689******************986 PP
3	zf-CCCH	29	1.8e-09	374	400	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ + ++G C + drC+FaHg+ GBG77208.1 374 WKTRLCNKWEANGACFFADRCHFAHGE 400 8************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 891 aa Download sequence
MGGGVDGGGW GWKEEGKGVG KGRGGGRGEG SAGAVAEGGR GAECGSGGVF GTSSTTSNYS 60 SGGRPAGAGG ALDTVGGASS ASAAYKGGTR GVGESGKSSS GSSSHSHLQR HPAVSSSLPI 120 NGRIVSSSSN GEGGREGGGR EGCMGAKKGG GGGGGGGGGG GGGEEPPWKR LRTADESGPA 180 GASDVCGGTG GELTAAPAGG DLQKGGNCTN TSAYSSPGSQ SGPQSTGGSL RYRPWLFKTR 240 LCAKFMSDRM CPYSDGCSFA HGNHELQTPP PPFVSDMAGP GVLGEGGGGG GGGGGVAGGG 300 GGGGGGGDGG GGGQYGSGNP RKLRACMKFM KEGSCPYGER CCFWHDDGTS KPPGGVQGMS 360 ASSFTKLGIK PPNWKTRLCN KWEANGACFF ADRCHFAHGE AELQPFNGPR QPYHSPEQLF 420 YGFPPFNGPP PQQQQQSNLA SPLPPLSPPN APFSSPVPRR ASSLGLGSAS AGLLSADPSL 480 PSGVRPSSSP GVSLAAGSSA SGSGPVVGGS SSSNLSTPMV SPASSSANVE GKQSQTLSSL 540 PATRTVPDLR AGTAATGVDS PAAPLAGHRF VAQQQTTSSR REGGLGGGAG GSGGGGPASR 600 VTVEMSVALQ TDSQLAHGCL EQSQSQSRRP VGGLGRGYSE GGFNMFAYGD CPFDEAEDDG 660 LQQVYAQHVI APGPSSASFH DPGAVRGSAV VPMPMPSAIP EEQCHASAAV AGSGQLPEET 720 WSPPGIVRGR GGGGGGGGGG GGSGGGSGGG EGGAGTGVEP QVEERIGTSA IGSDSKGGGL 780 AAAKASTSAS GSHLVYQQGE QLEAGVDQRA GSSVAGAPAT VASGSRGQGG GGGGGGASVG 840 RVQKKAEKEG FGRGGGRGGG GGGGGIGTQQ GVLTVPFFRF SSPTGAAGRG K

Sequence ? help Back to Top

Protein Sequence Length: 891 aa Download sequence

MGGGVDGGGW GWKEEGKGVG KGRGGGRGEG SAGAVAEGGR GAECGSGGVF GTSSTTSNYS  60
SGGRPAGAGG ALDTVGGASS ASAAYKGGTR GVGESGKSSS GSSSHSHLQR HPAVSSSLPI  120
NGRIVSSSSN GEGGREGGGR EGCMGAKKGG GGGGGGGGGG GGGEEPPWKR LRTADESGPA  180
GASDVCGGTG GELTAAPAGG DLQKGGNCTN TSAYSSPGSQ SGPQSTGGSL RYRPWLFKTR  240
LCAKFMSDRM CPYSDGCSFA HGNHELQTPP PPFVSDMAGP GVLGEGGGGG GGGGGVAGGG  300
GGGGGGGDGG GGGQYGSGNP RKLRACMKFM KEGSCPYGER CCFWHDDGTS KPPGGVQGMS  360
ASSFTKLGIK PPNWKTRLCN KWEANGACFF ADRCHFAHGE AELQPFNGPR QPYHSPEQLF  420
YGFPPFNGPP PQQQQQSNLA SPLPPLSPPN APFSSPVPRR ASSLGLGSAS AGLLSADPSL  480
PSGVRPSSSP GVSLAAGSSA SGSGPVVGGS SSSNLSTPMV SPASSSANVE GKQSQTLSSL  540
PATRTVPDLR AGTAATGVDS PAAPLAGHRF VAQQQTTSSR REGGLGGGAG GSGGGGPASR  600
VTVEMSVALQ TDSQLAHGCL EQSQSQSRRP VGGLGRGYSE GGFNMFAYGD CPFDEAEDDG  660
LQQVYAQHVI APGPSSASFH DPGAVRGSAV VPMPMPSAIP EEQCHASAAV AGSGQLPEET  720
WSPPGIVRGR GGGGGGGGGG GGSGGGSGGG EGGAGTGVEP QVEERIGTSA IGSDSKGGGL  780
AAAKASTSAS GSHLVYQQGE QLEAGVDQRA GSSVAGAPAT VASGSRGQGG GGGGGGASVG  840
RVQKKAEKEG FGRGGGRGGG GGGGGIGTQQ GVLTVPFFRF SSPTGAAGRG K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	139	GGREGGG
2	854	860	GGREGGG
3	855	861	GGREGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-19	C3H family protein