PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG74302.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1937aa MW: 216479 Da PI: 6.4889

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG74302.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.8	4.9e-12	1033	1109	2	71
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 W+ + aLi+a+r+ +++l+ r k ++ +W +v +++++ g+ r++++C +kw+nl +++kk+ + ++ GBG74302.1 1033 WSVDNMIALIRAKRDQDSHLQgmgtafaRMKPREWKWLDVEQRLKKVGVDREAERCGKKWDNLMQKFKKVHHLQGLS 1109 9999********7777776444333266899999********************************9888763 PP

Sequence ? help Back to Top
Protein Sequence Length: 1937 aa Download sequence
MEGGGNMLAT TKEAAELIPL DQYVTLGYPG LGMIGTIRPA PEQRDVAEWQ PSLGEMKLGG 60 PTFVTGEIDV LNIIRALDHQ IPLPIGHLLS ISEQANERML QHCKANRKRF GLARTANTKT 120 KGPMPYENAA GASDPIHTGL IQKDDNFLRI KPIPWKSAEC DIEVWGIPYN AIIDSRASVL 180 AILLRVVEKA GRKNDLIMLT ERDQLFSADK ENIKTVGRMT NVAFRLGKVH ALGDVVVLDV 240 NTYDVLFGLP ALVALRANLD FERRSIILRN TGGKPYVVPM RLTLRTTANI APRVSPAMTG 300 TLCMITWDNR QRSKDADSSD DDDDPVILEM AQERIQYPVQ RTNVKTMSRT NQDLQRTQAM 360 IMGEPLVQIS RMVDSLEPPR TMYEGISPLL ARYNDKRHYC DITDLPKSLL TSAKEIRLLR 420 LGAEINSLEP PERLENGLGI KIATKPVPWQ DIRDGVTPEE HVAIREQDAQ MMATVSSWRS 480 DNSFISTPPP GNTKRWVRCP MGICNAPATF QRAMNVTFQN FVNKKQLTQG MINFCVIVYM 540 DDILVYSETY HGHAQHIEWT LGAPRDAGFK ITLEKSEFFL SEILFLGYVV TRGGLRPDSR 600 KVAAVKEALV PTLLTQVRAF LGLASYYRPF IKGFAAIARP LTNLLWKDQP LSWDAECAHA 660 FVALKETLAT TPILIRPDPS KQFILITDWQ PEAISAILAF LTERALNDHL LAPRGYISAI 720 RQVHHPRLNL DLLRLAQFFC TQGVYAAAEF RFAGSRQAVV LAEAVTVQQW SALGISHVST 780 VVAFNGDIST VSALRHTAIR TKLREWGQQL VAEWNHWLTR HRDNLALTDD IDLGGIRALQ 840 HEPAVVLPEI VPFQPPVREA SGNNRDPPRQ QYRTPSLSRG TSARPLWIQS PSPLSTTSTA 900 ARRRGEFGET DCGIDDVGDA HDGREVWAEQ RQTLHPRREE SITHGVQRLR VGEHEDDGNA 960 PAVGPNDQEW NNEHGEGGEE DAGHVPPFKQ SSMKGRGGKT RACAHNGRWG EIAVGKGSDA 1020 EADANAEGGR QFWSVDNMIA LIRAKRDQDS HLQGMGTAFA RMKPREWKWL DVEQRLKKVG 1080 VDREAERCGK KWDNLMQKFK KVHHLQGLSG KQDFFQFFGK ERLSKGFNFN MDRAVYDEIL 1140 GSTAKSHTIN PKNVADTGVP GGVRLPSASS ADHESVGDGY AAAGHDDDDD GSTRGSSQTT 1200 GNPAGFAKRK STRQQTFEAM TECMEKHGAL VASSMDNSSK RQCSIQIRQC EALEAEVEVQ 1260 KKHYAASDEV SKLMCHALLE IAKAIRERQS SCRLCCAPRR FHRPHDAKVI AVPSSMYPSP 1320 ARRGRGGFRL AVLAREVGGG PIGWMSPPVT SPYPSASTAG AEEKDEVESK AEHGQIHIPR 1380 RLLPAATVSH HPLEREVTLS PSPDNIDEPN CAPSPNQGEF IHPRVVKEAH LPMTRSPSPI 1440 SVTLGDDKTQ RFFDQTVTDL LFFLTLEPTD RSPASHRHRS STHLDVMERG YDFILGTPWS 1500 RRFRSTEADW ATNTLVLKTK XGQTYRVPFI GTXXIPRPDP PPPEPSVPTP SPSITVTSPR 1560 QFAHFIQQDD VNFFMVNVTD LLHYDPPCPD VEIISLEPDP PSISMALIST SVPPPSVEST 1620 PSSRADADAE ELARYTTDLE PAVRDLIREY HDVFPSSFSY AGIPPMRNVE HSIQLVPDYR 1680 VHHLAPYRLS IPEATELKHL LEELLRLGFI KPSNSPWGAP VLFARKADGT LRLCIDYRGL 1740 NRYTVKNTEQ LKTAFRSRFG HYEFTVMPFG LTNAPATFQR AMNDIRDILE RYVLVYLDDI 1800 LVYSRTLEEH LRHLRDVLDR LRRHGFYAKL SKCRFAQHKV DFLGHYVSDQ GLHMDDVKIT 1860 AIAECPTPTS AKQLRSFLGL TSYYSQGGGG GGGGGEDMAD EEEEEEEKDM AEEEEEKEQK 1920 EEEEEEEEED EEEQEVG

Sequence ? help Back to Top

Protein Sequence Length: 1937 aa Download sequence

MEGGGNMLAT TKEAAELIPL DQYVTLGYPG LGMIGTIRPA PEQRDVAEWQ PSLGEMKLGG  60
PTFVTGEIDV LNIIRALDHQ IPLPIGHLLS ISEQANERML QHCKANRKRF GLARTANTKT  120
KGPMPYENAA GASDPIHTGL IQKDDNFLRI KPIPWKSAEC DIEVWGIPYN AIIDSRASVL  180
AILLRVVEKA GRKNDLIMLT ERDQLFSADK ENIKTVGRMT NVAFRLGKVH ALGDVVVLDV  240
NTYDVLFGLP ALVALRANLD FERRSIILRN TGGKPYVVPM RLTLRTTANI APRVSPAMTG  300
TLCMITWDNR QRSKDADSSD DDDDPVILEM AQERIQYPVQ RTNVKTMSRT NQDLQRTQAM  360
IMGEPLVQIS RMVDSLEPPR TMYEGISPLL ARYNDKRHYC DITDLPKSLL TSAKEIRLLR  420
LGAEINSLEP PERLENGLGI KIATKPVPWQ DIRDGVTPEE HVAIREQDAQ MMATVSSWRS  480
DNSFISTPPP GNTKRWVRCP MGICNAPATF QRAMNVTFQN FVNKKQLTQG MINFCVIVYM  540
DDILVYSETY HGHAQHIEWT LGAPRDAGFK ITLEKSEFFL SEILFLGYVV TRGGLRPDSR  600
KVAAVKEALV PTLLTQVRAF LGLASYYRPF IKGFAAIARP LTNLLWKDQP LSWDAECAHA  660
FVALKETLAT TPILIRPDPS KQFILITDWQ PEAISAILAF LTERALNDHL LAPRGYISAI  720
RQVHHPRLNL DLLRLAQFFC TQGVYAAAEF RFAGSRQAVV LAEAVTVQQW SALGISHVST  780
VVAFNGDIST VSALRHTAIR TKLREWGQQL VAEWNHWLTR HRDNLALTDD IDLGGIRALQ  840
HEPAVVLPEI VPFQPPVREA SGNNRDPPRQ QYRTPSLSRG TSARPLWIQS PSPLSTTSTA  900
ARRRGEFGET DCGIDDVGDA HDGREVWAEQ RQTLHPRREE SITHGVQRLR VGEHEDDGNA  960
PAVGPNDQEW NNEHGEGGEE DAGHVPPFKQ SSMKGRGGKT RACAHNGRWG EIAVGKGSDA  1020
EADANAEGGR QFWSVDNMIA LIRAKRDQDS HLQGMGTAFA RMKPREWKWL DVEQRLKKVG  1080
VDREAERCGK KWDNLMQKFK KVHHLQGLSG KQDFFQFFGK ERLSKGFNFN MDRAVYDEIL  1140
GSTAKSHTIN PKNVADTGVP GGVRLPSASS ADHESVGDGY AAAGHDDDDD GSTRGSSQTT  1200
GNPAGFAKRK STRQQTFEAM TECMEKHGAL VASSMDNSSK RQCSIQIRQC EALEAEVEVQ  1260
KKHYAASDEV SKLMCHALLE IAKAIRERQS SCRLCCAPRR FHRPHDAKVI AVPSSMYPSP  1320
ARRGRGGFRL AVLAREVGGG PIGWMSPPVT SPYPSASTAG AEEKDEVESK AEHGQIHIPR  1380
RLLPAATVSH HPLEREVTLS PSPDNIDEPN CAPSPNQGEF IHPRVVKEAH LPMTRSPSPI  1440
SVTLGDDKTQ RFFDQTVTDL LFFLTLEPTD RSPASHRHRS STHLDVMERG YDFILGTPWS  1500
RRFRSTEADW ATNTLVLKTK XGQTYRVPFI GTXXIPRPDP PPPEPSVPTP SPSITVTSPR  1560
QFAHFIQQDD VNFFMVNVTD LLHYDPPCPD VEIISLEPDP PSISMALIST SVPPPSVEST  1620
PSSRADADAE ELARYTTDLE PAVRDLIREY HDVFPSSFSY AGIPPMRNVE HSIQLVPDYR  1680
VHHLAPYRLS IPEATELKHL LEELLRLGFI KPSNSPWGAP VLFARKADGT LRLCIDYRGL  1740
NRYTVKNTEQ LKTAFRSRFG HYEFTVMPFG LTNAPATFQR AMNDIRDILE RYVLVYLDDI  1800
LVYSRTLEEH LRHLRDVLDR LRRHGFYAKL SKCRFAQHKV DFLGHYVSDQ GLHMDDVKIT  1860
AIAECPTPTS AKQLRSFLGL TSYYSQGGGG GGGGGEDMAD EEEEEEEKDM AEEEEEKEQK  1920
EEEEEEEEED EEEQEVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	7e-08	Trihelix family protein