PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG72458.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 975aa MW: 103296 Da PI: 7.9561

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG72458.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.6	3.2e-08	319	371	18	70
trihelix 18 eerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 + ++ r kl++ +W +v +++++ g+ ++++C +kw+nl +++kk+ + ++ GBG72458.1 319 GIAYARMKLREWKWLDVEQRLKKVGVDTEAERCGKKWDNLMQQFKKVHHFQGL 371 333446799*************************************9887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 975 aa Download sequence
MADVFRRLPL LVLAVVLLLL LVVFHVCILD AVPRRGRRRR SSKKDVGMEG RQGMCRSAGD 60 QGGGHRAGQS PARSSRSSEQ SGYAHMPPHL QPLPDTSDEE EEDRRSRTVP LGSGSIQDWA 120 AIELCGSRDG GYDQSYTELL QQGLSDDEGD GGVNLSFGLC SGKSSAASRT VIVNNHPDDE 180 GRQLTAVARS SKSPASIREA SGNNGDPPRQ QFRTPCRKND GDAPAVGADN QEWNDDDGEG 240 GEDDAGHVPP LKQSSMGGRG GKTRACARNG NRGKKAAGNG SDAEADGDAE GGRQFWSVDN 300 MIALNRAKLD QDAHLQGMGI AYARMKLREW KWLDVEQRLK KVGVDTEAER CGKKWDNLMQ 360 QFKKVHHFQG LSGKQDFFQF SGKERLSKGF NFNMDRAVYD EILGSTVKSH TINPKNVADI 420 GAPSGVHLPF ATSADPEFVG DGDAAVGHDD DEDGSTRGHS TSVLAILAFA AFIVFVAAFI 480 AFLSILAAFI AFLAILAFVA FIAFLAASIA FLAILAAFIA FLAAFIAFLA ILAAFIAFLA 540 ILAAFIAFLA IFAPVAILPV VTSISPVALP SRHVAATSVL GHVNFIASLF DRGVLTSVSS 600 SPTPSSPPSP RSQSIPPSPL SCSSPIRAIV QNVFQAVNDS DDIIATPVIA AETTITICCR 660 TLFTVDAEIF SWRLAYLEVG VSRVLSSRGS GRAKSARKLA VEAAIRERKG RHVANKQRKL 720 VQGASPLPKF VEDDEWVASQ VESDFLEEEE VSLKRKSARR GSGALRIDDV GERRGGGGRA 780 MMEDVIDINA AAASGRGGGS RRPTTSRGSG TCERSPGSAR GCRLRANTSN PEGDDLYRHW 840 RQRASRQSGE QEPLSCAGAA RGCIRGGCGA RAGGAAAGGA LHAPEGARAA GAAAAGASQA 900 AEGARAGGAR AGRVPQAGEG ARAGDVAAQG EDDEALVNRV RQQNARDGIE ALSKVWVDDI 960 RVWNETKGNA IVKLM

Sequence ? help Back to Top

Protein Sequence Length: 975 aa Download sequence

MADVFRRLPL LVLAVVLLLL LVVFHVCILD AVPRRGRRRR SSKKDVGMEG RQGMCRSAGD  60
QGGGHRAGQS PARSSRSSEQ SGYAHMPPHL QPLPDTSDEE EEDRRSRTVP LGSGSIQDWA  120
AIELCGSRDG GYDQSYTELL QQGLSDDEGD GGVNLSFGLC SGKSSAASRT VIVNNHPDDE  180
GRQLTAVARS SKSPASIREA SGNNGDPPRQ QFRTPCRKND GDAPAVGADN QEWNDDDGEG  240
GEDDAGHVPP LKQSSMGGRG GKTRACARNG NRGKKAAGNG SDAEADGDAE GGRQFWSVDN  300
MIALNRAKLD QDAHLQGMGI AYARMKLREW KWLDVEQRLK KVGVDTEAER CGKKWDNLMQ  360
QFKKVHHFQG LSGKQDFFQF SGKERLSKGF NFNMDRAVYD EILGSTVKSH TINPKNVADI  420
GAPSGVHLPF ATSADPEFVG DGDAAVGHDD DEDGSTRGHS TSVLAILAFA AFIVFVAAFI  480
AFLSILAAFI AFLAILAFVA FIAFLAASIA FLAILAAFIA FLAAFIAFLA ILAAFIAFLA  540
ILAAFIAFLA IFAPVAILPV VTSISPVALP SRHVAATSVL GHVNFIASLF DRGVLTSVSS  600
SPTPSSPPSP RSQSIPPSPL SCSSPIRAIV QNVFQAVNDS DDIIATPVIA AETTITICCR  660
TLFTVDAEIF SWRLAYLEVG VSRVLSSRGS GRAKSARKLA VEAAIRERKG RHVANKQRKL  720
VQGASPLPKF VEDDEWVASQ VESDFLEEEE VSLKRKSARR GSGALRIDDV GERRGGGGRA  780
MMEDVIDINA AAASGRGGGS RRPTTSRGSG TCERSPGSAR GCRLRANTSN PEGDDLYRHW  840
RQRASRQSGE QEPLSCAGAA RGCIRGGCGA RAGGAAAGGA LHAPEGARAA GAAAAGASQA  900
AEGARAGGAR AGRVPQAGEG ARAGDVAAQG EDDEALVNRV RQQNARDGIE ALSKVWVDDI  960
RVWNETKGNA IVKLM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-06	Trihelix family protein