PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG70556.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 511aa MW: 54489.8 Da PI: 10.8096

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG70556.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.7	6.4e-13	41	116	2	70
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ + aLi+a+r m++++ r kl++ +W +v +++++ g++r++++C +kw+nl +++kk+ + ++ GBG70556.1 41 WSVDDMIALIRAKRdqdahlqGMGTAFARMKLREWKWLDVEQRLKKVGVNREAERCGKKWDNLMQQFKKVHHFQGL 116 99999*******44444444444555779************************************9887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MGGRGGKTRA CARNGRRGKI AVGKGSDAEA DADTEGGRQF WSVDDMIALI RAKRDQDAHL 60 QGMGTAFARM KLREWKWLDV EQRLKKVGVN REAERCGKKW DNLMQQFKKV HHFQGLSGKQ 120 DFFQFSRKER LSKGFNFNMD RAVYDEILGS TAKSHTINPK NVVNTGAPGG VRLPSASFVD 180 HESVGDGDAA AGHDDDDGST RGSSQTTGSP TSFGKRKITR KQTFKALTEC MEKHGAQVAS 240 TMESNMGLSR VMSSRGSGRG KSAGKLAVEA AIREKKRCHV ANKLRKVVEG SSSLAINVED 300 EDWVAERVAS QVETDFEEEE EVPLKRKSSR RGSGALWIED IGERRGGGGR AVMEDVIDVN 360 AAVASRQGVG TAVTHQHRAP VPRVNEGPIA QEVVVRARTP GTLWVTTGTD IGVNAQVVGQ 420 GKNNRSPAQE LRGAASGGAA HAGEGARAGG AAAGGASHAG EGARAGGAAT ARASHAAEGT 480 RAGGVKPRGG HRWWKGRGQG MSQERGRTTK R

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MGGRGGKTRA CARNGRRGKI AVGKGSDAEA DADTEGGRQF WSVDDMIALI RAKRDQDAHL  60
QGMGTAFARM KLREWKWLDV EQRLKKVGVN REAERCGKKW DNLMQQFKKV HHFQGLSGKQ  120
DFFQFSRKER LSKGFNFNMD RAVYDEILGS TAKSHTINPK NVVNTGAPGG VRLPSASFVD  180
HESVGDGDAA AGHDDDDGST RGSSQTTGSP TSFGKRKITR KQTFKALTEC MEKHGAQVAS  240
TMESNMGLSR VMSSRGSGRG KSAGKLAVEA AIREKKRCHV ANKLRKVVEG SSSLAINVED  300
EDWVAERVAS QVETDFEEEE EVPLKRKSSR RGSGALWIED IGERRGGGGR AVMEDVIDVN  360
AAVASRQGVG TAVTHQHRAP VPRVNEGPIA QEVVVRARTP GTLWVTTGTD IGVNAQVVGQ  420
GKNNRSPAQE LRGAASGGAA HAGEGARAGG AAAGGASHAG EGARAGGAAT ARASHAAEGT  480
RAGGVKPRGG HRWWKGRGQG MSQERGRTTK R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	5e-10	Trihelix family protein