PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG70519.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 772aa MW: 84389.2 Da PI: 10.2502

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG70519.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.8	2.8e-13	42	113	2	66
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 W+ +++ aLi+a+r+ + +++ r k ++ +W++v+++++ g+ r++++C +kw+nl +++kk+ + GBG70519.1 42 WSVEQIIALIRAKRDQDAHMQgmghayaRMKPREWKWQDVAQRLKNVGVYRNAEKCGKKWDNLMQQFKKVHH 113 9***********7777777444333367899**********************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 772 aa Download sequence
MAGKGGKSKP SGHNARSRAK KGQGKGSGGE GDSDAEEKHN FWSVEQIIAL IRAKRDQDAH 60 MQGMGHAYAR MKPREWKWQD VAQRLKNVGV YRNAEKCGKK WDNLMQQFKK VHHFQSPSGG 120 ADFFQLTSKE RASRGFNFTM DRAVYDEIEG STGMNHTIHP RNVADTGASG GVRPPSTSYV 180 DSDSVADGEG GAGREDDEEG STRASSQTTG TPDGSGKRKN TRQQTFEALT ECMEKHGELM 240 ASTMESASKR QCSIQVRQCE ALEAEVEVQR KHYAASDEWT AFSPRSCMPF ARCCAVACSR 300 RATLLTATVV VDHVTIYNAR RLPSLSSANR LGAIRRRRPV ITCRRSSSPP LPPSTSIRHS 360 SSSTFQSFVV ALTVIRHPVI RPCTHSRLFH SVFHSRRPAI IQPLRGVLVP KFCEPPTAIE 420 GAFVGSAMSS RGGGRKKAAL KQIVEGATPA KKGRHQAKRQ RKGVQVVAAG SARDVVEEAG 480 VEEEMTNDDD DFEDDDDEPL SRKARVGSAG GIRINEGGEG TPTARCGGGV AAANQPVFVN 540 VARDVARDVA RRDVAGRAKQ GAASHETAQR VLAPVNRPRT PAADVAGGSQ APVEGGTSFW 600 NDTQGSAVVR IIQEARAYLV AVARGVQPPA IRRSISLPHN SIPQHKIEDE SELNAAKERA 660 LKVQTISLKA IHGWVFKSES RKRGYHMAYQ YALNHAATDI ARAMWSAEDW RSLVSPMLFR 720 TTLNADMKLP LWFVGVNIVD RQAMDGGRVS YERLKGMAEA MRYLLTATMW IM

Sequence ? help Back to Top

Protein Sequence Length: 772 aa Download sequence

MAGKGGKSKP SGHNARSRAK KGQGKGSGGE GDSDAEEKHN FWSVEQIIAL IRAKRDQDAH  60
MQGMGHAYAR MKPREWKWQD VAQRLKNVGV YRNAEKCGKK WDNLMQQFKK VHHFQSPSGG  120
ADFFQLTSKE RASRGFNFTM DRAVYDEIEG STGMNHTIHP RNVADTGASG GVRPPSTSYV  180
DSDSVADGEG GAGREDDEEG STRASSQTTG TPDGSGKRKN TRQQTFEALT ECMEKHGELM  240
ASTMESASKR QCSIQVRQCE ALEAEVEVQR KHYAASDEWT AFSPRSCMPF ARCCAVACSR  300
RATLLTATVV VDHVTIYNAR RLPSLSSANR LGAIRRRRPV ITCRRSSSPP LPPSTSIRHS  360
SSSTFQSFVV ALTVIRHPVI RPCTHSRLFH SVFHSRRPAI IQPLRGVLVP KFCEPPTAIE  420
GAFVGSAMSS RGGGRKKAAL KQIVEGATPA KKGRHQAKRQ RKGVQVVAAG SARDVVEEAG  480
VEEEMTNDDD DFEDDDDEPL SRKARVGSAG GIRINEGGEG TPTARCGGGV AAANQPVFVN  540
VARDVARDVA RRDVAGRAKQ GAASHETAQR VLAPVNRPRT PAADVAGGSQ APVEGGTSFW  600
NDTQGSAVVR IIQEARAYLV AVARGVQPPA IRRSISLPHN SIPQHKIEDE SELNAAKERA  660
LKVQTISLKA IHGWVFKSES RKRGYHMAYQ YALNHAATDI ARAMWSAEDW RSLVSPMLFR  720
TTLNADMKLP LWFVGVNIVD RQAMDGGRVS YERLKGMAEA MRYLLTATMW IM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	23	ARSRAKKGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-11	Trihelix family protein