PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG70498.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

MYB

Protein Properties

Length: 696aa MW: 76913.8 Da PI: 7.2762

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG70498.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27	1e-08	179	226	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwq 45 WTteE l ++vk +G g+W++I + +Rt +++ +w GBG70498.1 179 LWTTEEIAALEQGVKTYGEGNWSAILHDAKlsriiSRRTSIDLRVKWK 226 5****************************9999999999999999996 PP
2	Myb_DNA-binding	34.7	4.1e-11	313	363	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 g+W++eE l d+v+++G g+Wk+I + k Rt ++k++w+ + GBG70498.1 313 GPWSKEEISALCDGVRMHGEGQWKRILQDPRfasvlKSRTNFDLKDKWRFF 363 89**********************************************976 PP
3	Myb_DNA-binding	31.5	4.2e-10	497	548	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 ++ WT eE l ++vk++G g+W+ I + k Rt ++k++w+ + GBG70498.1 497 KNQWTDEELAALCEGVKLYGEGCWRNILNDARlsqtlKSRTNVELKDKWRFF 548 678**********************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence
MLVGIQLGAL AEGTRVHGVG KWNAILSDPR LSRVLKSRTA ADLKEEWQAF QIDLKAYIME 60 HGCPPPALEL HGHTWEWTEI SACLKSHQDL ARFALAKPEE PPPPPPPPQQ PHQHQHQHQQ 120 QPPPPPLPPQ PQNPAAEFNQ EGGAQPPTHQ KQKQKASRPK PTLLSPSRFS RPVSGRAGLW 180 TTEEIAALEQ GVKTYGEGNW SAILHDAKLS RIISRRTSID LRVKWKAMKV AAMKAAQNSN 240 RRQIIPAAPA APQARIQELA ECSWGENSES VNFEARQEPA VLPAEEERRE DSAGNARPPG 300 FKQPRCFISG HGGPWSKEEI SALCDGVRMH GEGQWKRILQ DPRFASVLKS RTNFDLKDKW 360 RFFRKTKQYK AMEALREQFF SANGMAEQMQ SVPPHAFMGA QMCVGMAAPG VLVPRMECDM 420 QGFNGLAEPL EGDQSGMYIP RNGDSENTVM KESYSTAPPM NPMGAMAPPI ALLHHQSSPV 480 PNGQAPAEAG SGWKKKKNQW TDEELAALCE GVKLYGEGCW RNILNDARLS QTLKSRTNVE 540 LKDKWRFFRK SAAGVELMDR IRRRDGAGEG MVRREEGENG GGPANKMNEE TQQWESAGAL 600 GMMGDGLLMD ADINQDQDDS YDGADSDDDC AAGSEDKISL SGDDRTSKAL TRSESDDGTV 660 GGPPFRRKLK IMRHLGLAPP EDSAFVHTPP PWVSRS

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence

MLVGIQLGAL AEGTRVHGVG KWNAILSDPR LSRVLKSRTA ADLKEEWQAF QIDLKAYIME  60
HGCPPPALEL HGHTWEWTEI SACLKSHQDL ARFALAKPEE PPPPPPPPQQ PHQHQHQHQQ  120
QPPPPPLPPQ PQNPAAEFNQ EGGAQPPTHQ KQKQKASRPK PTLLSPSRFS RPVSGRAGLW  180
TTEEIAALEQ GVKTYGEGNW SAILHDAKLS RIISRRTSID LRVKWKAMKV AAMKAAQNSN  240
RRQIIPAAPA APQARIQELA ECSWGENSES VNFEARQEPA VLPAEEERRE DSAGNARPPG  300
FKQPRCFISG HGGPWSKEEI SALCDGVRMH GEGQWKRILQ DPRFASVLKS RTNFDLKDKW  360
RFFRKTKQYK AMEALREQFF SANGMAEQMQ SVPPHAFMGA QMCVGMAAPG VLVPRMECDM  420
QGFNGLAEPL EGDQSGMYIP RNGDSENTVM KESYSTAPPM NPMGAMAPPI ALLHHQSSPV  480
PNGQAPAEAG SGWKKKKNQW TDEELAALCE GVKLYGEGCW RNILNDARLS QTLKSRTNVE  540
LKDKWRFFRK SAAGVELMDR IRRRDGAGEG MVRREEGENG GGPANKMNEE TQQWESAGAL  600
GMMGDGLLMD ADINQDQDDS YDGADSDDDC AAGSEDKISL SGDDRTSKAL TRSESDDGTV  660
GGPPFRRKLK IMRHLGLAPP EDSAFVHTPP PWVSRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17520.1	1e-12	MYB_related family protein