PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG70355.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 465aa MW: 50725.7 Da PI: 8.8342

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG70355.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.3	1.4e-11	143	226	1	79
trihelix 1 rWtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 +W ++e+ L+++r+ + e+ + +k++k+ Wee+ + ++++g++r+p+ Ck +w+ +++ + k+++++ + s+ +s + GBG70355.1 143 KWGEEETIFLLKFRSeqvaakgKNSEKRGVAKSNKKVWEEIFALLEKEGYNRKPTDCKRRWNVVKRWFNKVNDNDDR--SGYKSYW 226 7************55554444444444467***************************************9987..3444444 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MDGWRAPPGE QAAEGEDSNG GNCGGTFIHP TVVLRGDASE ESIAAVRRQL FLRAAAANSA 60 VSASSEDVRR WGWTSLPSNP SMAIVDVEGV NQVVSPPFVG GGHSALQHMS QVNMSQTGGP 120 TVEKPARQGI DSTVVQRKKR GGKWGEEETI FLLKFRSEQV AAKGKNSEKR GVAKSNKKVW 180 EEIFALLEKE GYNRKPTDCK RRWNVVKRWF NKVNDNDDRS GYKSYWKMTL SERVEANLDV 240 NMRRTWYDVL VPYNKHNQTA NPTHLVDTGA EEEVKPVLGA EGPRRGDDDK VPPSVPRRAP 300 VQSGGGEGGV GEGTTLGSDG RGPGSVAGSS TVTGLAGATP TSKPRKNTSV RDQALTGVTT 360 AMKEHTDAIR ISSSEQSASN KDCTELHCDT LGRLCDREMQ SQRELTEMTC AVMRADIASR 420 LSCMQTSHHG RMDMLYWPVR FVGYRRAFHV ANVGGHSDTL DGRIS

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MDGWRAPPGE QAAEGEDSNG GNCGGTFIHP TVVLRGDASE ESIAAVRRQL FLRAAAANSA  60
VSASSEDVRR WGWTSLPSNP SMAIVDVEGV NQVVSPPFVG GGHSALQHMS QVNMSQTGGP  120
TVEKPARQGI DSTVVQRKKR GGKWGEEETI FLLKFRSEQV AAKGKNSEKR GVAKSNKKVW  180
EEIFALLEKE GYNRKPTDCK RRWNVVKRWF NKVNDNDDRS GYKSYWKMTL SERVEANLDV  240
NMRRTWYDVL VPYNKHNQTA NPTHLVDTGA EEEVKPVLGA EGPRRGDDDK VPPSVPRRAP  300
VQSGGGEGGV GEGTTLGSDG RGPGSVAGSS TVTGLAGATP TSKPRKNTSV RDQALTGVTT  360
AMKEHTDAIR ISSSEQSASN KDCTELHCDT LGRLCDREMQ SQRELTEMTC AVMRADIASR  420
LSCMQTSHHG RMDMLYWPVR FVGYRRAFHV ANVGGHSDTL DGRIS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	165	RKKRGGKWGEEETIFLLKFRSEQVAAKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-08	Trihelix family protein