PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG68067.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 804aa MW: 85812 Da PI: 6.6561

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG68067.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.6	6.6e-13	512	596	1	80
trihelix 1 rWtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 rW + e+ L++++ + e+++ ++ k W ++sk++ + gf r k+Ck+kw nl++ y+++ +++++ s+++s + GBG68067.1 512 RWGDGETVMLVRLKCedkvfvgVDSEKFGVAAHKRRSWVDISKRLTDAGFPRRDKECKDKWHNLHRFYRRVVDNDRR--SGKQSYWD 596 8*********99977777777788888889***************************************9998..56666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence
MDALKSHVDL HHSGSDVPGH TTSDVHVPGT VPKRPVVRLG LGASTSEEYD ELAEHLRTRR 60 LGPAQHRMPV FASASSDEGE PSKRGFRAWT PIRGSSAVPS VVSPFGSAYL RDGMPSASPV 120 YSVLSNFHHH VSNAAPVNVL SHNAMQPLPN LYVQSGFAQP TDWQARTSAG HHAIDRGMTF 180 ENVVLAGEWG NIAPCMGTMM PVSSLYSFPR SDMTPSGHFT TEMASGTPSH SHLPRHMSTS 240 AQLQTDVHMS NMLRGLPVFS SMYHEEPSHE FRRPVADNRD GDTHSVAPPS WNDASRPAFF 300 EGRTIGSEFL NAMPSSPLQG VPQSTGCYLQ RHPSCISGHP DDSDVSGHAV LSHQGASQSG 360 SCDAQGPLDS HAPYLAVRFD SGRSDCPPGG EDVHVSGGEY ITGGEVHMGV SPSEGASRMV 420 GKEAAIGGEQ RLTADDDVAQ ERCAVGGDGG SDDGNVDKFA DAVTGCQSQF EDGESLPSAS 480 GVAPHVVSGA VGVASTPPSN GTNVSDQQSG SRWGDGETVM LVRLKCEDKV FVGVDSEKFG 540 VAAHKRRSWV DISKRLTDAG FPRRDKECKD KWHNLHRFYR RVVDNDRRSG KQSYWDMTPR 600 ERGAKGMNFI LKREWFDMID KVDKTSPSVN PGRMTDPGMV HVRDRSGAAA AGGGGMSAGG 660 DGGGAECTGD GQRAGGMSAG GDGGGADGPS YDMGGDSEAV QSDMPPKRKR TILSAREQST 720 RSITAAMREH TSSITKSALD VCDRQVAMQL KVAKGDRKVR LRTADTIGTK VEVGCQVLAE 780 AIKSIGTTGR QRRRTDMMQS SDEE

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence

MDALKSHVDL HHSGSDVPGH TTSDVHVPGT VPKRPVVRLG LGASTSEEYD ELAEHLRTRR  60
LGPAQHRMPV FASASSDEGE PSKRGFRAWT PIRGSSAVPS VVSPFGSAYL RDGMPSASPV  120
YSVLSNFHHH VSNAAPVNVL SHNAMQPLPN LYVQSGFAQP TDWQARTSAG HHAIDRGMTF  180
ENVVLAGEWG NIAPCMGTMM PVSSLYSFPR SDMTPSGHFT TEMASGTPSH SHLPRHMSTS  240
AQLQTDVHMS NMLRGLPVFS SMYHEEPSHE FRRPVADNRD GDTHSVAPPS WNDASRPAFF  300
EGRTIGSEFL NAMPSSPLQG VPQSTGCYLQ RHPSCISGHP DDSDVSGHAV LSHQGASQSG  360
SCDAQGPLDS HAPYLAVRFD SGRSDCPPGG EDVHVSGGEY ITGGEVHMGV SPSEGASRMV  420
GKEAAIGGEQ RLTADDDVAQ ERCAVGGDGG SDDGNVDKFA DAVTGCQSQF EDGESLPSAS  480
GVAPHVVSGA VGVASTPPSN GTNVSDQQSG SRWGDGETVM LVRLKCEDKV FVGVDSEKFG  540
VAAHKRRSWV DISKRLTDAG FPRRDKECKD KWHNLHRFYR RVVDNDRRSG KQSYWDMTPR  600
ERGAKGMNFI LKREWFDMID KVDKTSPSVN PGRMTDPGMV HVRDRSGAAA AGGGGMSAGG  660
DGGGAECTGD GQRAGGMSAG GDGGGADGPS YDMGGDSEAV QSDMPPKRKR TILSAREQST  720
RSITAAMREH TSSITKSALD VCDRQVAMQL KVAKGDRKVR LRTADTIGTK VEVGCQVLAE  780
AIKSIGTTGR QRRRTDMMQS SDEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-07	Trihelix family protein