PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG66332.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1154aa MW: 126382 Da PI: 4.8235

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG66332.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	33.3	1.3e-10	789	857	2	63
trihelix 2 WtkqevlaLiearremeerlrrg.......klkkplWeevskkmrergferspkqCkekwenlnkrykk 63 W+ + aLi+a+r+ + +l+ k ++ +W +v +++++ g+ r+++qC +kw+nl +++kk GBG66332.1 789 WSVDDMIALIRAKRDQDAHLQGMgtafacmKPREWKWLDVEQRLKKVGVDREAEQCGKKWDNLMQQFKK 857 99999*******9999998532223333688889999***************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1154 aa Download sequence
MEMSGTSNVE VITEQQGEAM TANGLVPSTT PSLEFPPPPP PPFSHPCNLS PIIAYTHQAG 60 TIDQCTSDSE AGATYPSCHQ QQQQAEFPAL APSGTLSSAA PVSAASSPSW TPSSGPFATC 120 MVGVVTSSYA SHNPLSPSPA FSHIRPLLRG CYTSATRPMM CPPHQRVGGT QFLDGSWIFK 180 SSGNRVTTTA LTVPVHGESE VGPHPHSLLV NPQSGAGSRK ATRMIRGRTD AMQIQKAALK 240 TAKMLIINEE NSHQRKRLAE GKDDAGVDLK SRRPGDAYEQ QRTEEDEDDE EEDDEDEEGE 300 EEVGDEGEEE EDEQQGDECS MGEDDMDADE DGGDDKEEEE EEIDVEETET GEEEEEQDEE 360 EEEEEEEEEQ EEDGEEKREG EENAKYKMTV DTTKIGVNAR TPTLANRSGM TPPHPEGHNP 420 KRRKKKRRRT ADNNMMIMMT GPTPITGRQQ VPSSPSWPRC RRPRAEARRQ KATTTRTRDN 480 FGWTAGIVRS LLRLRKEVRE DLGIDYGHHP SNVSVWKDIA VRMYQKHPET ARLDAMQFKN 540 KFNNLRSTCA SYTEVLRQGL SGDEGDGSIN LSFGLCSGRS SAASRTVIVD NHPDDEGGQV 600 TAVVQSLKSP PPVWEASGNN RDPPRQQYRT PSVSRGASTR PLWMQSPSPL SASWTAARRR 660 GECGETDCVI NDVGDAREGR EVWAEQRRTL HPQREESITW GMQRLRVGDH ENDGDAPAVG 720 ADDQEWNDDD GEGGEEDAGH VSPFKQSSMG GRGGKTRACA LNGRRGKKAV GKGSDAEADA 780 DAEGGRQFWS VDDMIALIRA KRDQDAHLQG MGTAFACMKP REWKWLDVEQ RLKKVGVDRE 840 AEQCGKKWDN LMQQFKKRLW KGFNFNMDRA VYDEILGSTA KSHTINLKNV ADTGSPGGVR 900 LPSATSADHE SVGDGDAVAG HDDDDSDGGS TRGSSQTMAS SAGFGKRKST RQQTFEALTE 960 CMEKHGALVA SMMESNNKRQ CSIQIRQCEA GDVDPILTTC FAIDVEILTS RVVKLEVGLS 1020 HVMSSRGSGR GKSAGKLAVE AAIREKKGRH VANKHRMLVE GGSQLARNVE DEEWVAEEAA 1080 SQVESDFEEE EEVSLKRKSS RRGSGALRIE DVGERRGGGG RALMEDVIDV NAAATSRRGG 1140 GTAVTQQHRA QCHV

Sequence ? help Back to Top

Protein Sequence Length: 1154 aa Download sequence

MEMSGTSNVE VITEQQGEAM TANGLVPSTT PSLEFPPPPP PPFSHPCNLS PIIAYTHQAG  60
TIDQCTSDSE AGATYPSCHQ QQQQAEFPAL APSGTLSSAA PVSAASSPSW TPSSGPFATC  120
MVGVVTSSYA SHNPLSPSPA FSHIRPLLRG CYTSATRPMM CPPHQRVGGT QFLDGSWIFK  180
SSGNRVTTTA LTVPVHGESE VGPHPHSLLV NPQSGAGSRK ATRMIRGRTD AMQIQKAALK  240
TAKMLIINEE NSHQRKRLAE GKDDAGVDLK SRRPGDAYEQ QRTEEDEDDE EEDDEDEEGE  300
EEVGDEGEEE EDEQQGDECS MGEDDMDADE DGGDDKEEEE EEIDVEETET GEEEEEQDEE  360
EEEEEEEEEQ EEDGEEKREG EENAKYKMTV DTTKIGVNAR TPTLANRSGM TPPHPEGHNP  420
KRRKKKRRRT ADNNMMIMMT GPTPITGRQQ VPSSPSWPRC RRPRAEARRQ KATTTRTRDN  480
FGWTAGIVRS LLRLRKEVRE DLGIDYGHHP SNVSVWKDIA VRMYQKHPET ARLDAMQFKN  540
KFNNLRSTCA SYTEVLRQGL SGDEGDGSIN LSFGLCSGRS SAASRTVIVD NHPDDEGGQV  600
TAVVQSLKSP PPVWEASGNN RDPPRQQYRT PSVSRGASTR PLWMQSPSPL SASWTAARRR  660
GECGETDCVI NDVGDAREGR EVWAEQRRTL HPQREESITW GMQRLRVGDH ENDGDAPAVG  720
ADDQEWNDDD GEGGEEDAGH VSPFKQSSMG GRGGKTRACA LNGRRGKKAV GKGSDAEADA  780
DAEGGRQFWS VDDMIALIRA KRDQDAHLQG MGTAFACMKP REWKWLDVEQ RLKKVGVDRE  840
AEQCGKKWDN LMQQFKKRLW KGFNFNMDRA VYDEILGSTA KSHTINLKNV ADTGSPGGVR  900
LPSATSADHE SVGDGDAVAG HDDDDSDGGS TRGSSQTMAS SAGFGKRKST RQQTFEALTE  960
CMEKHGALVA SMMESNNKRQ CSIQIRQCEA GDVDPILTTC FAIDVEILTS RVVKLEVGLS  1020
HVMSSRGSGR GKSAGKLAVE AAIREKKGRH VANKHRMLVE GGSQLARNVE DEEWVAEEAA  1080
SQVESDFEEE EEVSLKRKSS RRGSGALRIE DVGERRGGGG RALMEDVIDV NAAATSRRGG  1140
GTAVTQQHRA QCHV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	421	427	KRRKKKR
2	421	429	KRRKKKRRR
3	422	428	KRRKKKR
4	422	427	RRKKKR
5	423	429	KRRKKKR
6	424	429	KKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-06	Trihelix family protein