PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG65448.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 881aa MW: 95389.8 Da PI: 5.661

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG65448.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43	1.2e-13	311	382	2	66
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 W+ +++ aLi+a+r+ + +++ r k ++ +W++v+++++ g+ r +++C +kw+nl +++kk+ + GBG65448.1 311 WSVEHIIALIRAKRDQDAHMQgmghayaRMKPREWKWQDVAQRLKNVGVDRDAEKCGKKWDNLMQQFKKVHH 382 9***********7777777444333367899**********************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence
MADVFRKLPV LLLVVLLLLL LVVFHMCILG NVLRRRSKRR SSMKDGRTEA RQAIAKSGGE 60 QVGGRRCGGS PLTVGRASQR VGYEALPPHL QPLPGSSDEE EERRPRTSFT ELLRPGLSGD 120 EGDGRVNLSF GLSTGRSSTP SRKGLVYPYP DDDGGQLTVV DRSSNTRALA RETTGANPNS 180 STQQARAPSL SRAAQGRPHW MLSPSPLSAA SEVPCPRGGS IDAETNFFDV GDGRDAREVW 240 KEHRWELQAR REESITRGVE HLRVGDREKE KDSPPPEADD DNEDDNDGKG GQGKGSGGDG 300 DGDAEEKRNF WSVEHIIALI RAKRDQDAHM QGMGHAYARM KPREWKWQDV AQRLKNVGVD 360 RDAEKCGKKW DNLMQQFKKV HHFQSPSGGG DFFQLSSKER ASKGFNLTMD RAVYDEIEGS 420 PGMNHTIHPK NVSDTGASGG VRLPSTSNAD PESVADGDGG AGREDDDEGS TGGSSQTTGA 480 PADFGKRKST RQQTFDALTE CMEKHGALMA STMESASKRQ CSIQVRQCEA LEAEVEVQRK 540 HYAASGEVNK LMCHALLEIA KAICSTRDVN EEVVEEHEII HEDDDFEEEE EQPLKRKPRA 600 SSGGGIKINE GGDETPSARR GGGGVTGGHA DFVDVERDVP RREIGGRVKE GVVAHESAQC 660 AQTPSKRLNT PPVDVAGSSQ AAVQGGALRS PSTVPRGGAV TVAGEAGEVP KAGDDGVVAE 720 DDEALVHRLR GALGTTEAID GGHVSYERLK AMAEAMRYLL AATMWIIRMA GDDPRSHYDA 780 WVFVQLSEKT TLLASMNRQF DARRHITQAA QVMTDKLGRP PPTFAPPPVY IPDWVSKCGV 840 TFSHDATLAS PMEAKRLDWL GTGPPEGCDE DDDGVDKGQG G

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence

MADVFRKLPV LLLVVLLLLL LVVFHMCILG NVLRRRSKRR SSMKDGRTEA RQAIAKSGGE  60
QVGGRRCGGS PLTVGRASQR VGYEALPPHL QPLPGSSDEE EERRPRTSFT ELLRPGLSGD  120
EGDGRVNLSF GLSTGRSSTP SRKGLVYPYP DDDGGQLTVV DRSSNTRALA RETTGANPNS  180
STQQARAPSL SRAAQGRPHW MLSPSPLSAA SEVPCPRGGS IDAETNFFDV GDGRDAREVW  240
KEHRWELQAR REESITRGVE HLRVGDREKE KDSPPPEADD DNEDDNDGKG GQGKGSGGDG  300
DGDAEEKRNF WSVEHIIALI RAKRDQDAHM QGMGHAYARM KPREWKWQDV AQRLKNVGVD  360
RDAEKCGKKW DNLMQQFKKV HHFQSPSGGG DFFQLSSKER ASKGFNLTMD RAVYDEIEGS  420
PGMNHTIHPK NVSDTGASGG VRLPSTSNAD PESVADGDGG AGREDDDEGS TGGSSQTTGA  480
PADFGKRKST RQQTFDALTE CMEKHGALMA STMESASKRQ CSIQVRQCEA LEAEVEVQRK  540
HYAASGEVNK LMCHALLEIA KAICSTRDVN EEVVEEHEII HEDDDFEEEE EQPLKRKPRA  600
SSGGGIKINE GGDETPSARR GGGGVTGGHA DFVDVERDVP RREIGGRVKE GVVAHESAQC  660
AQTPSKRLNT PPVDVAGSSQ AAVQGGALRS PSTVPRGGAV TVAGEAGEVP KAGDDGVVAE  720
DDEALVHRLR GALGTTEAID GGHVSYERLK AMAEAMRYLL AATMWIIRMA GDDPRSHYDA  780
WVFVQLSEKT TLLASMNRQF DARRHITQAA QVMTDKLGRP PPTFAPPPVY IPDWVSKCGV  840
TFSHDATLAS PMEAKRLDWL GTGPPEGCDE DDDGVDKGQG G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	8e-09	Trihelix family protein