PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG63227.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 985aa MW: 107402 Da PI: 6.0767

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG63227.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.7	2.6e-12	329	400	2	66
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 W+ +++ aLi+a+r me+++ r k ++ +W++v+++++ g+ r++++C +kw+nl +++ k+ + GBG63227.1 329 WSVEHIIALIRAKRdqdahmqGMEHAYARMKPREWKWQDVAQRLKNVGVYRNAEKCGKKWDNLMQQFMKVHH 400 9***********555555455555557789*********************************99865 PP

Sequence ? help Back to Top
Protein Sequence Length: 985 aa Download sequence
MADVFRRLPL LLLVVLLLLL VVLFRLCILG NMPPRRRKIR SSMKDARMEA RQEIPRSDGE 60 QVGGRRCGGS LSTVGRASQR VGCDALPPHL QPLPGSSDEE EEVERRPQTV SLGSGSMQPR 120 SCAGRAAACT SSRSLNSFDM VLAKTKEMAT LTFVDRSART RALASETAGA NRNSSTAQPG 180 AASLSKSAQG RPEWMQLPSP LSAASEVARG RGVGVDGGTD FLDVGDGRDG REVWRDLRRD 240 HRLRREEYIT QGVECLHVGD RENKNETDDP PADAEDDDDD DEDNNTDMAG KGGKSKPSGR 300 NARSRAKKRQ GKGSGGEGDR DAKEKRNFWS VEHIIALIRA KRDQDAHMQG MEHAYARMKP 360 REWKWQDVAQ RLKNVGVYRN AEKCGKKWDN LMQQFMKVHH FQSPSGGVGF FMLTSKERAS 420 RSFNFTMDRA VYDEIEGSTG MNHTIHPRNV ADTGASGGVH PPSTSYVDPD SVVDEEGGAG 480 REDDKEGSTR GSSQTTGTPG VSGKRKNTRQ QTFEALTECM EKQWELMAST MESASKRQCS 540 IQVRQCEALE AEVEVQRKHY AASDERKGVK VVAAGSARDV VEEVVVEEEM TNDDDGFEDD 600 DDEPQPRKAR VGSAVGIRIN EGGEGTPAAR RGGGVAAANQ PVFVDVARDV ARRDVAGRAK 660 EGAASHETAQ RVLVPVNRPR TPAADVAGGS QAAVEGGTSR SPAVAARGGA VAVPGEAVDV 720 PKGGDGVAGG EDDEALVHRL RGQRAATHAM DAAAKLWEDD NRVWNDTQGS AVVRIIQEAP 780 RISLVSPMLF YTTLNADMKL PFWFMGVNIV DRHEDDECTA YQEACIQRLV RDFTSVVGTA 840 EAMDGGRVSY ERLKGMAKAM RYLLAATMWI MRMAGEDPRS HYDAWVFVQL MAKTMLLASV 900 NCQFVARRHI TQSAQVMTDK LGRPPPTFAP PPVYIPDWAS KCGVTFWHDA TLASPTEAKR 960 LDWLGTGPPE DDDDDAEGDD KGEGG

Sequence ? help Back to Top

Protein Sequence Length: 985 aa Download sequence

MADVFRRLPL LLLVVLLLLL VVLFRLCILG NMPPRRRKIR SSMKDARMEA RQEIPRSDGE  60
QVGGRRCGGS LSTVGRASQR VGCDALPPHL QPLPGSSDEE EEVERRPQTV SLGSGSMQPR  120
SCAGRAAACT SSRSLNSFDM VLAKTKEMAT LTFVDRSART RALASETAGA NRNSSTAQPG  180
AASLSKSAQG RPEWMQLPSP LSAASEVARG RGVGVDGGTD FLDVGDGRDG REVWRDLRRD  240
HRLRREEYIT QGVECLHVGD RENKNETDDP PADAEDDDDD DEDNNTDMAG KGGKSKPSGR  300
NARSRAKKRQ GKGSGGEGDR DAKEKRNFWS VEHIIALIRA KRDQDAHMQG MEHAYARMKP  360
REWKWQDVAQ RLKNVGVYRN AEKCGKKWDN LMQQFMKVHH FQSPSGGVGF FMLTSKERAS  420
RSFNFTMDRA VYDEIEGSTG MNHTIHPRNV ADTGASGGVH PPSTSYVDPD SVVDEEGGAG  480
REDDKEGSTR GSSQTTGTPG VSGKRKNTRQ QTFEALTECM EKQWELMAST MESASKRQCS  540
IQVRQCEALE AEVEVQRKHY AASDERKGVK VVAAGSARDV VEEVVVEEEM TNDDDGFEDD  600
DDEPQPRKAR VGSAVGIRIN EGGEGTPAAR RGGGVAAANQ PVFVDVARDV ARRDVAGRAK  660
EGAASHETAQ RVLVPVNRPR TPAADVAGGS QAAVEGGTSR SPAVAARGGA VAVPGEAVDV  720
PKGGDGVAGG EDDEALVHRL RGQRAATHAM DAAAKLWEDD NRVWNDTQGS AVVRIIQEAP  780
RISLVSPMLF YTTLNADMKL PFWFMGVNIV DRHEDDECTA YQEACIQRLV RDFTSVVGTA  840
EAMDGGRVSY ERLKGMAKAM RYLLAATMWI MRMAGEDPRS HYDAWVFVQL MAKTMLLASV  900
NCQFVARRHI TQSAQVMTDK LGRPPPTFAP PPVYIPDWAS KCGVTFWHDA TLASPTEAKR  960
LDWLGTGPPE DDDDDAEGDD KGEGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	38	PRRRK
2	302	310	ARSRAKKRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	8e-10	Trihelix family protein