PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG62932.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1262aa MW: 137287 Da PI: 4.9471

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG62932.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31.9	3.5e-10	379	450	2	66
trihelix 2 WtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 W+ ++ aLi+a+r+++ +l+++ +++ +W +v +++ + g+ r +C +kw+nl +++kki + GBG62932.1 379 WSVDHMVALIRAKRDLDAQLQAAGhafawmrSREWKWLDVRERLLKVGVDRPTDKCGKKWDNLMQQFKKIHT 450 999****************9733444555************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1262 aa Download sequence
MVVLHGRRAS QAAAGPPCGD SASRCRLCSG VHIGEVAFTY LQESRGEEER GHGRAAAESC 60 HIVGHLSQPP ACDLYRCRQK NSGPSPYEGL PPHMQPLPDS DEGEADVDVS NTVPLGSGST 120 QEWMGSQLYD RRGAKYRQSF TSLLHEGAQD EERLPPVDLT IGLRSGSPSS ATRTVLVNPH 180 PNDDAGQVTL VGRRTRGGSA PQETSEKARE RPRVQATSGP SIPRTTGGRP EWMNPPPVFS 240 RGRNTVPRPV ERGVSEEDFP FEGAHGDGRR VWKESRQELR RQQEESITQG VQRLRVGERA 300 GQADAVGGGG DVWTDGDEVQ CDAEEDDNGD VFPLRAPNMG GRGGRGRAST NAGRRWKRSS 360 ATSADAEGEG DEEGGRNFWS VDHMVALIRA KRDLDAQLQA AGHAFAWMRS REWKWLDVRE 420 RLLKVGVDRP TDKCGKKWDN LMQQFKKIHT FMGISGKEDF LQLTSQQRAE KRFSFNMDRA 480 VYEEIKGAKE RSHTISPSNV ADTGAAGGVQ LPSAQSATPK SVGDGDAAGD GNDEDDSSAR 540 GGSQTTGSPT GFRKRKNVRQ QIFEALSECM EKHGALMAST MESASRGQCE AMESASKRQC 600 SIQIRQCEAI EAKVEVQKQH CVASNKVSKL MCHALLEIAK AIRERRVVVV SSSSPSSLSV 660 FSAMTNTRNS GKGKRGRDSQ KMEAAGVVKR GRHHAKKPKA SSGSALVIGR SAREEWVTKA 720 SSGQDDDFES EADTFHGRKG TLRELSNARM VSGEEGVDGG KDGGHEVARG KGEAGGGVGG 780 GVAAREERGQ PTTPGMRGAV PSKDVQAAQD VGKHPPMRAP SNPATPTAGQ ARRDEGAGVN 840 AAVRGQLATR KGSRSGGGCR WQRRSGNLAA LEAKAKLWVD DLHFWNETEG HGMFKIIQET 900 CLHLIAIAKG VKPSEIRKSI VLPNATIPRQ KLKDVSELGA AKERASRVQT IALRIIHGWI 960 FKSPNRARGY HCSYGYVLNH VATDLARAIW FGEDWRVCVS PAVVHNTLEL HMKLPIWYVG 1020 GVIHDRHEED EMASYQESTT QRLVGAFTNA VDMGEGVDGG RISYERLRNV ADCMRLLLSA 1080 AMWIMRMAGD NLRSHFEASH LVELIAKPTL IASLHGSFDA RRHVLQCVNA ALWTTTRGDR 1140 AQPPAGAAND DDDVDDDDVD DDDDNGDDDD DGDDNDDDDN DVHDDDDDRD AVDRDDDGDD 1200 DDGDDEDDDD DDDDDDVHDE DDDDDDDDDD HDDDEGGDGD DDDGGDDDDV VNDDGDRSWH 1260 GV

Sequence ? help Back to Top

Protein Sequence Length: 1262 aa Download sequence

MVVLHGRRAS QAAAGPPCGD SASRCRLCSG VHIGEVAFTY LQESRGEEER GHGRAAAESC  60
HIVGHLSQPP ACDLYRCRQK NSGPSPYEGL PPHMQPLPDS DEGEADVDVS NTVPLGSGST  120
QEWMGSQLYD RRGAKYRQSF TSLLHEGAQD EERLPPVDLT IGLRSGSPSS ATRTVLVNPH  180
PNDDAGQVTL VGRRTRGGSA PQETSEKARE RPRVQATSGP SIPRTTGGRP EWMNPPPVFS  240
RGRNTVPRPV ERGVSEEDFP FEGAHGDGRR VWKESRQELR RQQEESITQG VQRLRVGERA  300
GQADAVGGGG DVWTDGDEVQ CDAEEDDNGD VFPLRAPNMG GRGGRGRAST NAGRRWKRSS  360
ATSADAEGEG DEEGGRNFWS VDHMVALIRA KRDLDAQLQA AGHAFAWMRS REWKWLDVRE  420
RLLKVGVDRP TDKCGKKWDN LMQQFKKIHT FMGISGKEDF LQLTSQQRAE KRFSFNMDRA  480
VYEEIKGAKE RSHTISPSNV ADTGAAGGVQ LPSAQSATPK SVGDGDAAGD GNDEDDSSAR  540
GGSQTTGSPT GFRKRKNVRQ QIFEALSECM EKHGALMAST MESASRGQCE AMESASKRQC  600
SIQIRQCEAI EAKVEVQKQH CVASNKVSKL MCHALLEIAK AIRERRVVVV SSSSPSSLSV  660
FSAMTNTRNS GKGKRGRDSQ KMEAAGVVKR GRHHAKKPKA SSGSALVIGR SAREEWVTKA  720
SSGQDDDFES EADTFHGRKG TLRELSNARM VSGEEGVDGG KDGGHEVARG KGEAGGGVGG  780
GVAAREERGQ PTTPGMRGAV PSKDVQAAQD VGKHPPMRAP SNPATPTAGQ ARRDEGAGVN  840
AAVRGQLATR KGSRSGGGCR WQRRSGNLAA LEAKAKLWVD DLHFWNETEG HGMFKIIQET  900
CLHLIAIAKG VKPSEIRKSI VLPNATIPRQ KLKDVSELGA AKERASRVQT IALRIIHGWI  960
FKSPNRARGY HCSYGYVLNH VATDLARAIW FGEDWRVCVS PAVVHNTLEL HMKLPIWYVG  1020
GVIHDRHEED EMASYQESTT QRLVGAFTNA VDMGEGVDGG RISYERLRNV ADCMRLLLSA  1080
AMWIMRMAGD NLRSHFEASH LVELIAKPTL IASLHGSFDA RRHVLQCVNA ALWTTTRGDR  1140
AQPPAGAAND DDDVDDDDVD DDDDNGDDDD DGDDNDDDDN DVHDDDDDRD AVDRDDDGDD  1200
DDGDDEDDDD DDDDDDVHDE DDDDDDDDDD HDDDEGGDGD DDDGGDDDDV VNDDGDRSWH  1260
GV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-06	Trihelix family protein