PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG61835.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

MYB

Protein Properties

Length: 3081aa MW: 331362 Da PI: 5.6816

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG61835.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.4	5.3e-11	3	51	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 +g+W ++Ed +lv +++q+G+g W+++ ++ + R++k+c++rw ++l GBG61835.1 3 KGPWDPQEDAILVSYINQYGPGKWNLVRAKGFdLARCGKSCRLRWVNHL 51 79**********************9544336***********996 PP
2	Myb_DNA-binding	41.3	3.7e-13	58	100	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T eE++l +++ ++G+ W++Ia+ m+ gRt++++k++w++ GBG61835.1 58 TPFTVEEQQLVFELHGRFGNQ-WARIASQMP-GRTDNEIKNFWNT 100 68***************99.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 3081 aa Download sequence
MKKGPWDPQE DAILVSYINQ YGPGKWNLVR AKGFDLARCG KSCRLRWVNH LQPNLKKTPF 60 TVEEQQLVFE LHGRFGNQWA RIASQMPGRT DNEIKNFWNT KHRKLKQKKV NGEKGSSDGA 120 TNAGAVGGGP GAVTASTGTN TAESSGAGPG AGTTSTGTNT AESSGAGGGS GGARGGEKGG 180 ERGGERGGER GHHPGKMSNG TGSSSGRSTH GPRSKSSGGG GSSHAAASAA VTSLENGGGG 240 GGSGHHHSHM RGSRSHQHHH GSHGWSSLGS ASSEGGGGGG GGGGGGGGGG GGGGGGCGFP 300 KVPSTNSATA YLITHSGVKG SNSSSNLHAH GKQQQQQLHP HQNAGAGFSS LDITVGTCQH 360 SGGAGCVLGS PSLSTVLDPF DGLHEESTRH LVDDNDATGA AAFETATSSR AGIARVSRGV 420 ETCTDLEQSF SAWEEDNFPG HGQGRLHQGP TMVSAATQAE SHSSSGDKEQ VESMVEVVGK 480 PACKGIAAAA VAAMGTYSGA SLSGKSGLMS HTAGVTTGSG GGRSGGGLRK REASSQGGVG 540 GIANCVAGGH LSGTKAVGSP SKVRKRLSSS AAAAAAAAAA AAAASASASA TPAPPSAALI 600 TATTGMTIMP SANSPRRIII RRNDRQLAAT STQQSQQQQP QQQPQQQQQQ QQQQQQQQQQ 660 QQATSACHLS TTPVSSLSGV QPPAIPADVF GLWTAAGTLG GAGMVVGGGL EDFCAQSCEW 720 ATAGVGPAAH AFDEPTLSVG TETGKLVWVD PGPMSGHKDG CLYPGPEGDG WISLTEAGII 780 STNSFSQLDS SVPTPTMLAL ENRSPGSGGA WGSGGAKFNP LSENEMAKLR RGNIVRNFVT 840 AGQYAGDQSK MHGDRKLRCN LCGHLFQGGS SKAARHFTQA KFCKAGEMRV LAELWNGTNY 900 TFMPSTAQRV QRWMADEGIR DTRAPASGQR QRMDDAERDE IQDALDEEGH EGGAREGGVA 960 DEGDEGVGEP NLQGRRWEKR ARQTTIDEMY AREKLAEFSD AWLQWVYVKK LPFNAFRGPE 1020 FQRVQQAAER VPRSIQFRFP SYRVTAGVGI PSQRAKVATI MSKVRATFRH SGATILSDGR 1080 KSRSGKPLVN FLAGGANGAL LYATVARDGS VRDTADVVYR RWRAIILSVP AKDVIGFCTD 1140 SASNYTAAAR RFATDPEPDI RRITWLPCST HVCNLMLSDI GTRVGWVKET IIHARALVRF 1200 IKSHGAAHTL FRKVQWVQQQ IRDREFWQRV QYAILGMSPV HQLLRRMDRG GMMMSVVYEW 1260 SQHLLQLMRR VDVPTDMIEP CVREVAICNL HMLEPAHAAA HLLNPRRRSL TYYHSLETTA 1320 DDRRVVEECD IFLLAQTGGD PVGRLYRSVR DQMRAFHSRR GDWGDHDLSD AEAVNCRGDS 1380 GTERCAAWWF EHGRAHPELR TIAIRAEHER VSTTRRCKLG FAKLAQLVEI ATNLQLASCA 1440 RQGGGYVLPW VMGTGRGGTV AEEEEEEGDV EPEVWGAQPD GSVLEQEIQQ QIVAFHDSRP 1500 SRARSVRDMF GSKATELRPW PEGGDDVDAA AADDHIDDDW TDDDDTPLSR DPTAEQVYFT 1560 YGGGHDGMDS FTSVITGDVP STAQASGSSR AGGGHGGHSH AEVRVDDSGE QQPRGGLRQT 1620 GRRWEVRSDS EAEGEAEDEE VPLRDRRFSP SHHPISAQPE ALRRLERLAS TAGRDRTHDG 1680 EDRGGERTPS DAGIRPRSPS VLRTQDFDVV GLGGSLGDFS VEGRRHASPQ EVRTDADIER 1740 GPVETEEERD ARLDREEEER LRSLPQWEGR FAYLDEQCPQ RDLETGGGGG RDVDDFGVPE 1800 EAVQGEFDYE GQDAAAGGGS GGGRRGDEET AGVPEGQDVV MGGGSPSGGR GDSETAGDEG 1860 QGATVCGRGE GGPGGDGDTA GVGGDDGPDD DDDDDHGPED DPYRLALVLR DPTVPPLRPE 1920 DTAHTFFDVD ALAQALTDDP FAHVSRKSGK QRAPGKVYSP PMFVVLSPHW SGSSLSGVRG 1980 RESGAGEVGF GGRSDGGRDS VGSMPPPPAQ TPEARVDTGD GTAAPGVAHS DSSPPTVRGG 2040 VGGGWSAVRR VGDRLRADYD AGRGVFTGCT AVQTQAAEGG SGRPTLQMAG RMLGLSRAET 2100 RRSLVLEAAG TSADRLRGEQ FTSGEEGLLM RPGTRRQHGL SEVEARLAAG VAAGQAALDA 2160 IQRERERGIA AQAEEDEDAD TESEPIETAA RTHRAQVAAA AAAAHAAYVS GERGTGAGGH 2220 MAQVPEGEEG AGEDRMAARP PGKAARALVI MSSRKYEASL VKRHFDVLSP AGKDPSKGGK 2280 WWVCHYCDLK FSGNLNRLKE HFTKGICAVE KSTKTLTAEE ILRRKEGLRQ ARTDSGMARD 2340 GANALPVVTY LVAASTGGGL VEGVGDACGE AAGVACGEEN EFFNDMVDAI REAHPSWRLH 2400 SREAARNGRL NGQHQRAIED VGRLAKKWDR TSCMVQVDGW SDRRGRPHVN VMVSSPIGTV 2460 FWKSVCIAGK DKDACAYYRI LSTAIEEIGP RSVVGVIMDN ARVCVKAGEL VEKKYPWIFR 2520 VGCTEHALDL ALEDMDKRIL WFAETVKRGN VLGKFVMNHD KVRALFLTKS GGVEIKRPGV 2580 TRFATNILML QSLWDRANAL KLTLAASGWV SSLVPPHLRS QFEEVTATIL DGGFWERVDK 2640 ALRTTKLVDG PGATIAKVYH RMNGVVESIH KLDILADFEK AEVESILMDR WAFMTSELHC 2700 AAAFLDPEYR SQGSFRDTEI RAGFNIWLYT WCTDEMFDDV SWQVDEWVHL KGALQSEEAL 2760 RAARTKTPAM WLDVFASRLH LLQPQAIRLL GQASSSAACE RNWSLHELIF GRRRTRILPT 2820 RLSKLVYNNW NLHLQWRQER GRGVNDVHIL WVEEMSDAEL KEEAEQFYND WVKRVKNSMP 2880 SGENDTSDEE GELEDDDDGE EVPMARRWLR NDKVDNAMDQ EEGLAHIDKY TDDWHFNTRS 2940 GRQLERALRR LSGHERPTPE VQYNKEDREL ALRARETGDC VEGRKEGGSS RQRKMRRGDE 3000 GRRHASSEEG DDEGHDANDG EPRSVEEGTE HEEEEEEGEE EEEGEEEEEG EEEEEGEEEE 3060 EGEEEEEEEE GETSARGGAE D

Sequence ? help Back to Top

Protein Sequence Length: 3081 aa Download sequence

MKKGPWDPQE DAILVSYINQ YGPGKWNLVR AKGFDLARCG KSCRLRWVNH LQPNLKKTPF  60
TVEEQQLVFE LHGRFGNQWA RIASQMPGRT DNEIKNFWNT KHRKLKQKKV NGEKGSSDGA  120
TNAGAVGGGP GAVTASTGTN TAESSGAGPG AGTTSTGTNT AESSGAGGGS GGARGGEKGG  180
ERGGERGGER GHHPGKMSNG TGSSSGRSTH GPRSKSSGGG GSSHAAASAA VTSLENGGGG  240
GGSGHHHSHM RGSRSHQHHH GSHGWSSLGS ASSEGGGGGG GGGGGGGGGG GGGGGGCGFP  300
KVPSTNSATA YLITHSGVKG SNSSSNLHAH GKQQQQQLHP HQNAGAGFSS LDITVGTCQH  360
SGGAGCVLGS PSLSTVLDPF DGLHEESTRH LVDDNDATGA AAFETATSSR AGIARVSRGV  420
ETCTDLEQSF SAWEEDNFPG HGQGRLHQGP TMVSAATQAE SHSSSGDKEQ VESMVEVVGK  480
PACKGIAAAA VAAMGTYSGA SLSGKSGLMS HTAGVTTGSG GGRSGGGLRK REASSQGGVG  540
GIANCVAGGH LSGTKAVGSP SKVRKRLSSS AAAAAAAAAA AAAASASASA TPAPPSAALI  600
TATTGMTIMP SANSPRRIII RRNDRQLAAT STQQSQQQQP QQQPQQQQQQ QQQQQQQQQQ  660
QQATSACHLS TTPVSSLSGV QPPAIPADVF GLWTAAGTLG GAGMVVGGGL EDFCAQSCEW  720
ATAGVGPAAH AFDEPTLSVG TETGKLVWVD PGPMSGHKDG CLYPGPEGDG WISLTEAGII  780
STNSFSQLDS SVPTPTMLAL ENRSPGSGGA WGSGGAKFNP LSENEMAKLR RGNIVRNFVT  840
AGQYAGDQSK MHGDRKLRCN LCGHLFQGGS SKAARHFTQA KFCKAGEMRV LAELWNGTNY  900
TFMPSTAQRV QRWMADEGIR DTRAPASGQR QRMDDAERDE IQDALDEEGH EGGAREGGVA  960
DEGDEGVGEP NLQGRRWEKR ARQTTIDEMY AREKLAEFSD AWLQWVYVKK LPFNAFRGPE  1020
FQRVQQAAER VPRSIQFRFP SYRVTAGVGI PSQRAKVATI MSKVRATFRH SGATILSDGR  1080
KSRSGKPLVN FLAGGANGAL LYATVARDGS VRDTADVVYR RWRAIILSVP AKDVIGFCTD  1140
SASNYTAAAR RFATDPEPDI RRITWLPCST HVCNLMLSDI GTRVGWVKET IIHARALVRF  1200
IKSHGAAHTL FRKVQWVQQQ IRDREFWQRV QYAILGMSPV HQLLRRMDRG GMMMSVVYEW  1260
SQHLLQLMRR VDVPTDMIEP CVREVAICNL HMLEPAHAAA HLLNPRRRSL TYYHSLETTA  1320
DDRRVVEECD IFLLAQTGGD PVGRLYRSVR DQMRAFHSRR GDWGDHDLSD AEAVNCRGDS  1380
GTERCAAWWF EHGRAHPELR TIAIRAEHER VSTTRRCKLG FAKLAQLVEI ATNLQLASCA  1440
RQGGGYVLPW VMGTGRGGTV AEEEEEEGDV EPEVWGAQPD GSVLEQEIQQ QIVAFHDSRP  1500
SRARSVRDMF GSKATELRPW PEGGDDVDAA AADDHIDDDW TDDDDTPLSR DPTAEQVYFT  1560
YGGGHDGMDS FTSVITGDVP STAQASGSSR AGGGHGGHSH AEVRVDDSGE QQPRGGLRQT  1620
GRRWEVRSDS EAEGEAEDEE VPLRDRRFSP SHHPISAQPE ALRRLERLAS TAGRDRTHDG  1680
EDRGGERTPS DAGIRPRSPS VLRTQDFDVV GLGGSLGDFS VEGRRHASPQ EVRTDADIER  1740
GPVETEEERD ARLDREEEER LRSLPQWEGR FAYLDEQCPQ RDLETGGGGG RDVDDFGVPE  1800
EAVQGEFDYE GQDAAAGGGS GGGRRGDEET AGVPEGQDVV MGGGSPSGGR GDSETAGDEG  1860
QGATVCGRGE GGPGGDGDTA GVGGDDGPDD DDDDDHGPED DPYRLALVLR DPTVPPLRPE  1920
DTAHTFFDVD ALAQALTDDP FAHVSRKSGK QRAPGKVYSP PMFVVLSPHW SGSSLSGVRG  1980
RESGAGEVGF GGRSDGGRDS VGSMPPPPAQ TPEARVDTGD GTAAPGVAHS DSSPPTVRGG  2040
VGGGWSAVRR VGDRLRADYD AGRGVFTGCT AVQTQAAEGG SGRPTLQMAG RMLGLSRAET  2100
RRSLVLEAAG TSADRLRGEQ FTSGEEGLLM RPGTRRQHGL SEVEARLAAG VAAGQAALDA  2160
IQRERERGIA AQAEEDEDAD TESEPIETAA RTHRAQVAAA AAAAHAAYVS GERGTGAGGH  2220
MAQVPEGEEG AGEDRMAARP PGKAARALVI MSSRKYEASL VKRHFDVLSP AGKDPSKGGK  2280
WWVCHYCDLK FSGNLNRLKE HFTKGICAVE KSTKTLTAEE ILRRKEGLRQ ARTDSGMARD  2340
GANALPVVTY LVAASTGGGL VEGVGDACGE AAGVACGEEN EFFNDMVDAI REAHPSWRLH  2400
SREAARNGRL NGQHQRAIED VGRLAKKWDR TSCMVQVDGW SDRRGRPHVN VMVSSPIGTV  2460
FWKSVCIAGK DKDACAYYRI LSTAIEEIGP RSVVGVIMDN ARVCVKAGEL VEKKYPWIFR  2520
VGCTEHALDL ALEDMDKRIL WFAETVKRGN VLGKFVMNHD KVRALFLTKS GGVEIKRPGV  2580
TRFATNILML QSLWDRANAL KLTLAASGWV SSLVPPHLRS QFEEVTATIL DGGFWERVDK  2640
ALRTTKLVDG PGATIAKVYH RMNGVVESIH KLDILADFEK AEVESILMDR WAFMTSELHC  2700
AAAFLDPEYR SQGSFRDTEI RAGFNIWLYT WCTDEMFDDV SWQVDEWVHL KGALQSEEAL  2760
RAARTKTPAM WLDVFASRLH LLQPQAIRLL GQASSSAACE RNWSLHELIF GRRRTRILPT  2820
RLSKLVYNNW NLHLQWRQER GRGVNDVHIL WVEEMSDAEL KEEAEQFYND WVKRVKNSMP  2880
SGENDTSDEE GELEDDDDGE EVPMARRWLR NDKVDNAMDQ EEGLAHIDKY TDDWHFNTRS  2940
GRQLERALRR LSGHERPTPE VQYNKEDREL ALRARETGDC VEGRKEGGSS RQRKMRRGDE  3000
GRRHASSEEG DDEGHDANDG EPRSVEEGTE HEEEEEEGEE EEEGEEEEEG EEEEEGEEEE  3060
EGEEEEEEEE GETSARGGAE D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	520	527	GGGRSGGG
2	521	528	GGGRSGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26930.1	3e-39	MYB family protein