PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G26930.1 | ||||||||
Common Name | AtMYB97, MYB97 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 389aa MW: 43578.4 Da PI: 5.8382 | ||||||||
Description | myb domain protein 97 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44 | 5.3e-14 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ede l+ +v+++G g+W+++ ++ + R++k+c++rw ++l AT4G26930.1 21 KGPWTVAEDETLAAYVREYGEGNWNSVQKKTWLARCGKSCRLRWANHL 68 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.5e-17 | 74 | 117 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l+++++ qlG++ W++ a+ ++ gRt++++k++w++ AT4G26930.1 74 KGSFTPEEERLIIQLHSQLGNK-WARMAAQLP-GRTDNEIKNYWNT 117 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.839 | 16 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-10 | 20 | 70 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.87E-29 | 20 | 115 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-12 | 21 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-22 | 22 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.20E-10 | 23 | 68 | No hit | No description |
PROSITE profile | PS51294 | 25.994 | 69 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-16 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 74 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.05E-12 | 76 | 119 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-25 | 76 | 121 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001016 | developmental stage | L mature pollen stage | ||||
PO:0001017 | developmental stage | M germinated pollen stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MIVYGGGASE DGEGGGVVLK KGPWTVAEDE TLAAYVREYG EGNWNSVQKK TWLARCGKSC 60 RLRWANHLRP NLRKGSFTPE EERLIIQLHS QLGNKWARMA AQLPGRTDNE IKNYWNTRLK 120 RFQRQGLPLY PPEYSQNNHQ QQMYPQQPSS PLPSQTPASS FTFPLLQPPS LCPKRCYNTA 180 FSPKASYISS PTNFLVSSPT FLHTHSSLSS YQSTNPVYSM KHELSSNQIP YSASLGVYQV 240 SKFSDNGDCN QNLNTGLHTN TCQLLEDLME EAEALADSFR APKRRQIMAA LEDNNNNNNF 300 FSGGFGHRVS SNSLCSLQGL TPKEDESLQM NTMQDEDITK LLDWGSESEE ISNGQSSVIT 360 TENNLVLDDH QFAFLFPVDD DTNNLPGIC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-31 | 18 | 121 | 1 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 3e-31 | 18 | 121 | 1 | 103 | C-Myb DNA-Binding Domain |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 279 | 284 | RAPKRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 5823336 | 0.0 | ||||
Genevisible | 253939_at | 0.0 | ||||
Expression Atlas | AT4G26930 | - | ||||
AtGenExpress | AT4G26930 | - | ||||
ATTED-II | AT4G26930 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in the pollen tube nucleus during pollen tube growth through the pistil. {ECO:0000269|PubMed:23791732}. | |||||
Uniprot | TISSUE SPECIFICITY: Accumulates in pollen grains and pollen tube (PubMed:14500793, PubMed:23791732, PubMed:24278028). Mostly expressed in mature pollen grains, and, to a lower extent, in inflorescences and siliques (PubMed:24278028). {ECO:0000269|PubMed:14500793, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a putative transcription factor (MYB97). | |||||
UniProt | Transcription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB101 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G26930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G18570 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G26930 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF176002 | 0.0 | AF176002.1 Arabidopsis thaliana putative transcription factor (MYB97) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_194423.1 | 0.0 | myb domain protein 97 | ||||
Swissprot | Q9S773 | 0.0 | MYB97_ARATH; Transcription factor MYB97 | ||||
TrEMBL | A0A178V049 | 0.0 | A0A178V049_ARATH; MYB97 | ||||
STRING | AT4G26930.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9939 | 19 | 34 | Representative plant | OGRP5 | 17 | 1784 |
Link Out ? help Back to Top | |
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Phytozome | AT4G26930.1 |
Entrez Gene | 828800 |
iHOP | AT4G26930 |
wikigenes | AT4G26930 |