PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG61769.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 557aa MW: 60922.3 Da PI: 6.3871

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG61769.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.5	6.9e-13	148	219	2	66
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 W+ + + aLi+a+ + + +l+ r k+++ +W +v+++++ g+ r++ +C +kw+nl +++kk+ + GBG61769.1 148 WSVERIIALIRAKHDQDAHLQgmghvygRMKAREWKWNDVARRLKNAGVDRKADKCGKKWDNLMQQFKKVHH 219 99**********888888844444336689***********************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MRSPSPVYVA SNLGRRGGIV AEGGGNLDDV GDNVDGRLLW AEQRRELREG REEAIRRGVE 60 RLRIDRPAKE VEEPDAGLPF EEDDDENEGE GGDGNGGYAS PSENSDVGVK GGNTKAKSGN 120 GRGRPKKPQA KQNDGDGNGK AKEKRNFWSV ERIIALIRAK HDQDAHLQGM GHVYGRMKAR 180 EWKWNDVARR LKNAGVDRKA DKCGKKWDNL MQQFKKVHHF QSPSGGIDFF QLSAKERVSK 240 GFNFNMDRAV YDKIEVSTGF NETINPKNVA DTGASRGVHL PSASNADPEA VGDADAGAGG 300 DDEEERSTRG SSQTAGSPGA FGKRKSTRQQ TFKAMTDCME KHGPLMAVTM ESASKRQCSI 360 QLRQCVGKQV SEGELVPKKG RHDPAKRRRG VQGGKGVVGR EVELEWVDEE ERQEEDEDFQ 420 EEEDQTLKRK VKQRTGGAIR IEVGGGDAAE VAHDQPQIPS NKRNQQPVGV ASSSQAVIDV 480 SAKRSPALQP RGETVQVLCE VADGAKASDV QAVGEDDEAV VNKLRGQSEE AKAIEVAARL 540 WTDDICFWNQ TRGHEII

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MRSPSPVYVA SNLGRRGGIV AEGGGNLDDV GDNVDGRLLW AEQRRELREG REEAIRRGVE  60
RLRIDRPAKE VEEPDAGLPF EEDDDENEGE GGDGNGGYAS PSENSDVGVK GGNTKAKSGN  120
GRGRPKKPQA KQNDGDGNGK AKEKRNFWSV ERIIALIRAK HDQDAHLQGM GHVYGRMKAR  180
EWKWNDVARR LKNAGVDRKA DKCGKKWDNL MQQFKKVHHF QSPSGGIDFF QLSAKERVSK  240
GFNFNMDRAV YDKIEVSTGF NETINPKNVA DTGASRGVHL PSASNADPEA VGDADAGAGG  300
DDEEERSTRG SSQTAGSPGA FGKRKSTRQQ TFKAMTDCME KHGPLMAVTM ESASKRQCSI  360
QLRQCVGKQV SEGELVPKKG RHDPAKRRRG VQGGKGVVGR EVELEWVDEE ERQEEDEDFQ  420
EEEDQTLKRK VKQRTGGAIR IEVGGGDAAE VAHDQPQIPS NKRNQQPVGV ASSSQAVIDV  480
SAKRSPALQP RGETVQVLCE VADGAKASDV QAVGEDDEAV VNKLRGQSEE AKAIEVAARL  540
WTDDICFWNQ TRGHEII

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	129	GRGRPKKPQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	4e-08	Trihelix family protein