PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG61629.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 884aa MW: 96152 Da PI: 8.7538

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG61629.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.6	1.8e-09	378	452	2	69
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 W+ + ++L++ +r ++++++r + k+ +W++++k+m+ g r ++ C + w+nl + ykki++ ++ GBG61629.1 378 WSPEDQMLLVRCKReqdlhlaGLGHNYGRMQTKEWKWDDIAKRMANAGRPRDANDCMKNWDNLFQNYKKIQRFQN 452 7777778888888855555555566777899**************************************998665 PP

Sequence ? help Back to Top
Protein Sequence Length: 884 aa Download sequence
MKVERPYPPA FTNSRLQYSR ARVAPKVNFM AXVQRRLPLL VLVVVVFLIV VFLHVCLSWR 60 PWKQHRKRRA STKRAAGERP MAGMQAHTTY DCGASTAVRP ILYRHLDSWE TPLPPSDEEP 120 EPPTLPLASG STQLLSQTVR AGESASNEGG EFTSLMHRGL GDDDDDGVDL RFGLCSGGAR 180 EASRTSIIDA DPSPRGVQHA GSQHTEQSTL RGAAFVTGSV GPSAVAQQHG SIAPSADRLR 240 STCPARNGVA VGSLRIGGAR PSMPNRTTPT QPEFRDEGAC RPQVRTTPTV ENITRGVSNM 300 RAHSDGGDDD GGGGDDADER LMEDVEAGDD DDNIRIRPPG KTGGRGRGRS RGAVRGRSVG 360 RGGRGGASDD GGKSATYWSP EDQMLLVRCK REQDLHLAGL GHNYGRMQTK EWKWDDIAKR 420 MANAGRPRDA NDCMKNWDNL FQNYKKIQRF QNASGQPDFF RLSNEERKEH NFKFQMERVL 480 YNEIHAGMVG NHTIFPPNVA DTGSPDGVQL PRRGAGGGES VGSEAGGEGF PKERSSARDS 540 DNNAGSGAGR GKRKNARQQA LESIADVMDC YGELMSSTIE SSSKRQCNIF TRQCDILEQE 600 VAVPKAHYAA SDETRRMMCH ALMEIVAAIR GQSRVDCPPR RLSHVSATHP SDDGGSVQRG 660 SGGKVVADAR EVGGETAGAV GAGASGTVAP VATAREDARG EKKTDREGGE PGSSRVRRGV 720 MTKDLNDRAV LWVDDKAFWT TGEGRRLYNI VHETREYFVA IASELPPPAV PQSVVLPKSS 780 TRVARIADQS QLQQAISRAA AVENIALHIL HGWVFKSGSR PRGYNVAFHY SLESVATDIS 840 RVMWYGEEWC NIVSPAVCHA HDKSVNGFAT VDRRCEHRGQ IGQR

Sequence ? help Back to Top

Protein Sequence Length: 884 aa Download sequence

MKVERPYPPA FTNSRLQYSR ARVAPKVNFM AXVQRRLPLL VLVVVVFLIV VFLHVCLSWR  60
PWKQHRKRRA STKRAAGERP MAGMQAHTTY DCGASTAVRP ILYRHLDSWE TPLPPSDEEP  120
EPPTLPLASG STQLLSQTVR AGESASNEGG EFTSLMHRGL GDDDDDGVDL RFGLCSGGAR  180
EASRTSIIDA DPSPRGVQHA GSQHTEQSTL RGAAFVTGSV GPSAVAQQHG SIAPSADRLR  240
STCPARNGVA VGSLRIGGAR PSMPNRTTPT QPEFRDEGAC RPQVRTTPTV ENITRGVSNM  300
RAHSDGGDDD GGGGDDADER LMEDVEAGDD DDNIRIRPPG KTGGRGRGRS RGAVRGRSVG  360
RGGRGGASDD GGKSATYWSP EDQMLLVRCK REQDLHLAGL GHNYGRMQTK EWKWDDIAKR  420
MANAGRPRDA NDCMKNWDNL FQNYKKIQRF QNASGQPDFF RLSNEERKEH NFKFQMERVL  480
YNEIHAGMVG NHTIFPPNVA DTGSPDGVQL PRRGAGGGES VGSEAGGEGF PKERSSARDS  540
DNNAGSGAGR GKRKNARQQA LESIADVMDC YGELMSSTIE SSSKRQCNIF TRQCDILEQE  600
VAVPKAHYAA SDETRRMMCH ALMEIVAAIR GQSRVDCPPR RLSHVSATHP SDDGGSVQRG  660
SGGKVVADAR EVGGETAGAV GAGASGTVAP VATAREDARG EKKTDREGGE PGSSRVRRGV  720
MTKDLNDRAV LWVDDKAFWT TGEGRRLYNI VHETREYFVA IASELPPPAV PQSVVLPKSS  780
TRVARIADQS QLQQAISRAA AVENIALHIL HGWVFKSGSR PRGYNVAFHY SLESVATDIS  840
RVMWYGEEWC NIVSPAVCHA HDKSVNGFAT VDRRCEHRGQ IGQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-06	Trihelix family protein