PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GBG58955.1
Organism
Chara braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
Family Trihelix
Protein Properties Length: 409aa    MW: 44572.8 Da    PI: 7.877
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GBG58955.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix30.78.2e-10152226269
    trihelix   2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                 W+ +  ++L++ +r        + ++++r k k+ +We+ sk+m+  g  + +  C +kw+nl + ykki++ ++
  GBG58955.1 152 WSAEDQMLLVRCKRvqdmhlaGLSHNYGRMKTKEWKWEDMSKRMANAGRLKDADDCMKKWDNLFQNYKKIQRFQN 226
                 8888888888888855555555666677889**************************************987655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    
MAACIDCSVR QSIDTDLART PGVAAGPLRM GGARSLMPAC TTPIESGVRE EGTCRAPVRP  60
RPTVDNITRG VSNMRAHSDG GEDDVGFGDD ADEGMREDVE AGDDDDDVPI RPLGKTAGRG  120
RGRSRGRVRG RSVGRGGRGG VSDDTGKSPT YWSAEDQMLL VRCKRVQDMH LAGLSHNYGR  180
MKTKEWKWED MSKRMANAGR LKDADDCMKK WDNLFQNYKK IQRFQNASGR PDFFRLTNEE  240
RKEHNFKFGM DRALYNEIHA GMVGNHTIFP PNVADTGSPD GVQLPKRGAG GGESVCSEAV  300
GEGCPDDRSS ARESDSNVGS GAGGGKRKNA RQQAFESISD VMERHGALMS STIESSSKRQ  360
CSIFTRQCDI LEQEVAVKKA HYAASDETQR MMCQALLEIA AAIRGRSAM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119129RGRGRSRGRVR
2121131RGRGRSRGRVR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.15e-09Trihelix family protein