PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT60695.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GATA | ||||||||
Protein Properties | Length: 260aa MW: 29356.1 Da PI: 7.1408 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.2 | 4.8e-18 | 169 | 203 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG++y++ +l PHT60695.1 169 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 203 *******************************9885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence |
MDVYGVSAPD LFRIDDLLDF SNDQIFSTNN TNPDSSSHQY HHQPHSHNSS SAATATYYDN 60 LLPNSSDDFT DNLYVPSDDV AELEWLSNFV EDSFSNFSAN SITGTMNLSS NTTSFHGRSR 120 SKRSRSTSSW TTSLQNPNTT NTTKNKESSS VHTRERSFSP MDEDAPRRCT HCASEKTPQW 180 RTGPLGPKTL CNACGVRYKS GRLVPEYRPA ASPTFVLTQH SNSHRKVMEL RRQKEMLHQP 240 QQLPPPPTEE GMYGRHFRVC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 123 | RSRSKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60530.1 | 2e-63 | GATA family protein |