PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT59870.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SBP

Protein Properties

Length: 357aa MW: 39667.1 Da PI: 6.4346

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT59870.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	117.5	6.8e-37	145	222	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++Cead+se+k yh+rh+vC +++a++vl++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k++ PHT59870.1 145 RCQVPDCEADISELKGYHKRHRVCLRCANASAVLLDGHNKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKAT 222 6*************************************************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MDNQAFSPSQ TGAASRLANT HMTFSGVHDD PATSSLFDWA DLLEFNLDEQ LTISFDDPLR 60 PPPETQPMMG PVIPSSEDSP QSQDTEPGRI RKRDPRMVCS NFLAGRIPCA CPELDEKMEE 120 EELAGIGPGK KRARTLRASA GAGARCQVPD CEADISELKG YHKRHRVCLR CANASAVLLD 180 GHNKRYCQQC GKFHILSDFD EGKRSCRRKL ERHNNRRRRK ATDSSKTSAE KESQQVTMAD 240 DGSGDDDIVK DSTCMGSQLG EKEILLESEG HVPIYSTQGI QNNHSDSFTA SGETQADAEK 300 ENFKSSHSPS YYDSKSGFSS ACPTGRISFK LYDWNPAEFP RRLRHQVLKG LLLQFST

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MDNQAFSPSQ TGAASRLANT HMTFSGVHDD PATSSLFDWA DLLEFNLDEQ LTISFDDPLR  60
PPPETQPMMG PVIPSSEDSP QSQDTEPGRI RKRDPRMVCS NFLAGRIPCA CPELDEKMEE  120
EELAGIGPGK KRARTLRASA GAGARCQVPD CEADISELKG YHKRHRVCLR CANASAVLLD  180
GHNKRYCQQC GKFHILSDFD EGKRSCRRKL ERHNNRRRRK ATDSSKTSAE KESQQVTMAD  240
DGSGDDDIVK DSTCMGSQLG EKEILLESEG HVPIYSTQGI QNNHSDSFTA SGETQADAEK  300
ENFKSSHSPS YYDSKSGFSS ACPTGRISFK LYDWNPAEFP RRLRHQVLKG LLLQFST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	219	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	2e-82	SBP family protein