PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT58195.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 170aa MW: 19655.5 Da PI: 10.0543 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39.8 | 5.8e-13 | 15 | 63 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ie+k r+v fskR+ng+ KKA+E S L++a+ i+f + k + y PHT58195.1 15 KLIESKEARTVAFSKRKNGLGKKAKEYSNLTGADTGFILFTQAEKPHSY 63 569***********************************99998887766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence |
MDKRGGKGRQ KIEIKLIESK EARTVAFSKR KNGLGKKAKE YSNLTGADTG FILFTQAEKP 60 HSYGSPSIEK VIDKFHELKQ NDSLQNHTNM RKINVFEAFE DLRKEVQAFK EKYLDLKISI 120 DKHTLENRLK QFEAYKSRLD KIKKEIKGDV PGEQFKFISE VALDLEEMSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-19 | M-type_MADS family protein |