PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT58194.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 156aa MW: 17854.2 Da PI: 8.8639 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.2 | 6.9e-11 | 2 | 46 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k ie+k r+v fsk +ng+ KKA+E S L+ +v i+f + gk PHT58194.1 2 KLIESKEARTVAFSKGKNGLGKKAKEYSNLTREDVGFILFTQAGK 46 569*************************************99997 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 156 aa Download sequence |
MKLIESKEAR TVAFSKGKNG LGKKAKEYSN LTREDVGFIL FTQAGKPHSN GSPSIEKVID 60 KFHELKKNDS LQNHSDMSKT NVFEAFEDLR KEVQAFKEKA PDSEMPTDKH MLENRLKHFE 120 AYKSRLDKIK KERKGDVPAE QFGISEVTFD LEEMSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 7e-12 | M-type_MADS family protein |