PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT54706.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SRS

Protein Properties

Length: 356aa MW: 38898.6 Da PI: 7.1764

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT54706.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	222.6	7.7e-69	134	282	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql a++++ + ++++++k+kr+ + ++s+l s++l+s+++ le PHT54706.1 134 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLMALQQEGHN-NNNNNNKSKRQREDPSTSSLVSSRLPSTTTG--LE 229 5789***********************************************9998766544.4444445555555588899999999999765..89 PP DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + ++P++vs++avf+c+++ss+dd+e++laYq+avsigGhvfkGiLydqG e+ PHT54706.1 230 VGKFPAKVSTSAVFQCIQMSSIDDAEDQLAYQAAVSIGGHVFKGILYDQGHES 282 999*********************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MANFFSLGAG SGNQEQQQQQ EISSCHRSNN HNPAVPTEIS QESWFLYRND HNNQEIPTTY 60 KGFELWQSDT TTQHQPEQNQ QQQQHQFRYP IYPLQDFYST AVGLGVGPSR SGFDLSAGDH 120 EASRSGFMMM RSGGGGISCQ DCGNQAKKDC QHMRCRTCCK SRGFQCQTHV KSTWVPAAKR 180 RERQQQLMAL QQEGHNNNNN NNKSKRQRED PSTSSLVSSR LPSTTTGLEV GKFPAKVSTS 240 AVFQCIQMSS IDDAEDQLAY QAAVSIGGHV FKGILYDQGH ESQYNNMSTA GGDTSSGGSA 300 GVQNHHNSTA VATAITSGGA VGPTEASNFH DPSLFPAPLS TFMVAGTQFF PPSRSP

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MANFFSLGAG SGNQEQQQQQ EISSCHRSNN HNPAVPTEIS QESWFLYRND HNNQEIPTTY  60
KGFELWQSDT TTQHQPEQNQ QQQQHQFRYP IYPLQDFYST AVGLGVGPSR SGFDLSAGDH  120
EASRSGFMMM RSGGGGISCQ DCGNQAKKDC QHMRCRTCCK SRGFQCQTHV KSTWVPAAKR  180
RERQQQLMAL QQEGHNNNNN NNKSKRQRED PSTSSLVSSR LPSTTTGLEV GKFPAKVSTS  240
AVFQCIQMSS IDDAEDQLAY QAAVSIGGHV FKGILYDQGH ESQYNNMSTA GGDTSSGGSA  300
GVQNHHNSTA VATAITSGGA VGPTEASNFH DPSLFPAPLS TFMVAGTQFF PPSRSP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	208	KSKRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-70	SRS family protein