PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT54695.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 220aa MW: 25642 Da PI: 6.5348 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.8 | 1.1e-19 | 54 | 107 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le+ F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ PHT54695.1 54 KRKLSEEQVNLLEQSFGHEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKN 107 45899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 117.3 | 8.6e-38 | 53 | 144 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv+lLE+sF +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ +++rLe+ev +L+e+l+e PHT54695.1 53 RKRKLSEEQVNLLEQSFGHEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKNELETNIVDKCRLENEVLKLKEQLSE 144 8****************************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence |
MTSSMNDDQM LLISQYYPGI HTQPLPQQGE GKPRRRRKKN KGDVANGEMM MMRKRKLSEE 60 QVNLLEQSFG HEHKLESERK DKLASELGLD PRQVAVWFQN RRARWKNKKL EEEYSKLKNE 120 LETNIVDKCR LENEVLKLKE QLSEAEKEMQ RLQLERCDGI SSNSPTTSSL SMEAAMDPPF 180 LGEFGLDNAF YGPENTYYGP ANTYAQGLEW VNNLYMPYHM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 56 | RRRRKKNKGDVANGEMMMMRKRK |
2 | 35 | 57 | RRRRKKNKGDVANGEMMMMRKRK |
3 | 36 | 58 | RRRRKKNKGDVANGEMMMMRKRK |
4 | 37 | 59 | RRRRKKNKGDVANGEMMMMRKRK |
5 | 53 | 82 | RKRKLSEEQVNLLEQSFGHEHKLESERKDK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 2e-64 | HD-ZIP family protein |