PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT54483.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 277aa MW: 31222.5 Da PI: 8.3826

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT54483.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00086	215	237	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ +Fs+ L H ++ H PHT54483.1 215 PCPQCHLRFSTVKALIDHVQKvH 237 5*****************99988 PP
2	zf-C2H2	15.4	5.1e-05	249	271	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+k F+++ L+ H + H PHT54483.1 249 VCPRCSKGFRDPVALVEHVEKeH 271 7*****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MGTPEFANLG KHCSVEDCRQ IDFLPFTCDC CHKVYCLDHR SYIRHQCPTA NKNNVTVVIC 60 PLCAKGVRLN PNEDPNITWE SHVNTECDPS NYEKATKKKK CPVPRCKELL TFSNTIKCRD 120 CTLDHCLKHR FGPDHNCPGP KKPEPSFQFM NFLNGSKDEP KKAQPTSSSR WTTSLLKVVS 180 SVKEKFNSEF NQTQQTGQSS HATNHAVTNT SQVEPCPQCH LRFSTVKALI DHVQKVHEKN 240 GVMNLTVDVC PRCSKGFRDP VALVEHVEKE HKGTSKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-121	C2H2 family protein