PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT53962.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 275aa    MW: 30785.4 Da    PI: 4.8729
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT53962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS131.11.2e-40137257239358
        GRAS 239 vvvv.eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                 vv + +qea+hn++ Fl rfleal+yys++fdsl+a++p +s++r+k+Er ++g+ei+n+v ceg+er+  he+lekWr+ +e  GFk v+ls +a++q
  PHT53962.1 137 VVASdQQEASHNGPYFLGRFLEALHYYSTIFDSLDATFPGDSSQRAKLERYIFGPEIMNIVLCEGTERVVWHERLEKWRRVMEGKGFKGVALSANAVTQ 235
                 33332578******************************************************************************************* PP

        GRAS 337 aklllrkvksdgyrveeesgsl 358
                  k ll  ++ dgy++ e++g+l
  PHT53962.1 236 SKILLGLYSCDGYKLTEDNGCL 257
                 ********************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MQIESFNLPA LESFLDDDYD KEDLAFSYST LKVSGSGVAG STFKSFDALS VIPDFLECLV  60
LPNSSSNTSS SFVGSLLGKT FSSQVLNQDD EIFQTSSIIP LSQERQHEKQ QKQRPTYVQP  120
SLTQQQHTQI YNHNLVVVAS DQQEASHNGP YFLGRFLEAL HYYSTIFDSL DATFPGDSSQ  180
RAKLERYIFG PEIMNIVLCE GTERVVWHER LEKWRRVMEG KGFKGVALSA NAVTQSKILL  240
GLYSCDGYKL TEDNGCLPSL DVNRAMKSTR DSNTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-28GRAS family protein