PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT53887.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 809aa MW: 92286.8 Da PI: 6.8722

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT53887.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.3	3e-07	603	642	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eE e+ + k++G++ Wk a ++g + + ++k+ w+ PHT53887.1 603 KWTEEEYEIVRKFQKEHGNN-WKVLADELG--KHRFHVKDTWR 642 8***************99.******9..56777887776 PP

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence
MVAKGSTFPS GIKALADYVH GKGLKLGLYS DAGTQTCSKT MPGSLGHEYQ DANTFASWGV 60 DYLKYDNCNN ENRSPRERYP TMSKALQNSG RAIFYSICEW GGDNPATWAS PVGNSWRTTG 120 DISDDWGSMT SRADMNDQWA SYAGPGGWND PDMLEVGNGG MSFGEYRSHF SIWALAKAPL 180 IIGCDLRSMD QSAHDILSNS EVIAVNQDKL GVQGRKIKEY GDNLQVWAGP LSGNRKAVVL 240 WNRGSSKADI TAQWSDIGLD SSTVVDARDL WAFSYICCNN KTTNVVGVAN TDIEAKTDDC 300 DLKRKKEKKH GKHSEKFNED SDEVALRIVE GKKCRKLKKS RVAEQEKMHD TEDVQEDIVA 360 EVDEGDISSP IKIEEKNRTD NGNIKKRKKV KSGHSSEDPT HEIEEENRTD NGNIKKKKKV 420 KSGHSSEDPA HEIEEENRTD NGNIKKKKKV KSGHSSEDPT HEIEEENRKD NGNIKKKKKV 480 KSGHSSEDPT HEKSAKKVRF SGHVQIFPSS DDTSDEKHEI EDENLLRGKR FSKLEDEIVK 540 EAVHKYVDFH NLGEEGLEKI LNSRSYPEIK GCWKEIGSAI PYRPYTAVYY RAQILFRRSE 600 SRKWTEEEYE IVRKFQKEHG NNWKVLADEL GKHRFHVKDT WRRIRRPNQN KGQWTQEEYQ 660 SLFDLVNTDL RLRLSEEKRS KYGMLRDNIA WTATSDKLST RAEANCCLKW YDQLTSPMVA 720 KGEWADVDDY RLVDALFELD ASCIEDVDWD NLLDHRPGEI CRKRWNQMVL HIGKLKNSSF 780 AEQVEVLAKR YRPDFAEVRE AWDNKPVVP

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence

MVAKGSTFPS GIKALADYVH GKGLKLGLYS DAGTQTCSKT MPGSLGHEYQ DANTFASWGV  60
DYLKYDNCNN ENRSPRERYP TMSKALQNSG RAIFYSICEW GGDNPATWAS PVGNSWRTTG  120
DISDDWGSMT SRADMNDQWA SYAGPGGWND PDMLEVGNGG MSFGEYRSHF SIWALAKAPL  180
IIGCDLRSMD QSAHDILSNS EVIAVNQDKL GVQGRKIKEY GDNLQVWAGP LSGNRKAVVL  240
WNRGSSKADI TAQWSDIGLD SSTVVDARDL WAFSYICCNN KTTNVVGVAN TDIEAKTDDC  300
DLKRKKEKKH GKHSEKFNED SDEVALRIVE GKKCRKLKKS RVAEQEKMHD TEDVQEDIVA  360
EVDEGDISSP IKIEEKNRTD NGNIKKRKKV KSGHSSEDPT HEIEEENRTD NGNIKKKKKV  420
KSGHSSEDPA HEIEEENRTD NGNIKKKKKV KSGHSSEDPT HEIEEENRKD NGNIKKKKKV  480
KSGHSSEDPT HEKSAKKVRF SGHVQIFPSS DDTSDEKHEI EDENLLRGKR FSKLEDEIVK  540
EAVHKYVDFH NLGEEGLEKI LNSRSYPEIK GCWKEIGSAI PYRPYTAVYY RAQILFRRSE  600
SRKWTEEEYE IVRKFQKEHG NNWKVLADEL GKHRFHVKDT WRRIRRPNQN KGQWTQEEYQ  660
SLFDLVNTDL RLRLSEEKRS KYGMLRDNIA WTATSDKLST RAEANCCLKW YDQLTSPMVA  720
KGEWADVDDY RLVDALFELD ASCIEDVDWD NLLDHRPGEI CRKRWNQMVL HIGKLKNSSF  780
AEQVEVLAKR YRPDFAEVRE AWDNKPVVP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	303	336	KRKKEKKHGKHSEKFNEDSDEVALRIVEGKKCRK
2	385	389	KKRKK
3	385	418	KRKKEKKHGKHSEKFNEDSDEVALRIVEGKKCRK
4	386	419	KRKKEKKHGKHSEKFNEDSDEVALRIVEGKKCRK
5	415	448	KRKKEKKHGKHSEKFNEDSDEVALRIVEGKKCRK
6	416	449	KRKKEKKHGKHSEKFNEDSDEVALRIVEGKKCRK
7	445	478	KRKKEKKHGKHSEKFNEDSDEVALRIVEGKKCRK
8	446	479	KRKKEKKHGKHSEKFNEDSDEVALRIVEGKKCRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-130	MYB_related family protein