PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT53538.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 633aa MW: 70014.9 Da PI: 4.6499

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT53538.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.1	7e-53	28	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lp+G+rF+Ptdeelv++yL+ k++g + ++ +vi+evdi+k+ePwdLp + v+++++ew+fF+++d+ky++g+r nrat++gyWkatgkd+++++kkg PHT53538.1 28 LPVGYRFRPTDEELVNHYLRLKINGADSQV-SVIREVDICKLEPWDLPdMsVVESNDNEWFFFCPKDRKYQNGQRLNRATERGYWKATGKDRNITTKKG 125 799**********************999.99**********96347788999************************************* PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g+kktLv+y grap+g++t+Wv+heyr+ PHT53538.1 126 AKIGMKKTLVYYIGRAPEGKRTHWVIHEYRA 156 ***************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence
MMAVLPGDNP IAAIPVDKQM GIPPLNSLPV GYRFRPTDEE LVNHYLRLKI NGADSQVSVI 60 REVDICKLEP WDLPDMSVVE SNDNEWFFFC PKDRKYQNGQ RLNRATERGY WKATGKDRNI 120 TTKKGAKIGM KKTLVYYIGR APEGKRTHWV IHEYRATEKS LDGSHPGQGA FVLCRLFRKS 180 DLKQDEHVEN SNLDAEQNAS AAKSPTEDEL SEGATPFTVV QPLGDGDKSY AATFPKTKLY 240 GKQIPVESHS HSCIADDTED QMLDITSIPA AQDLEKELGN FCDPSSQPLD WKIFSPLHSQ 300 LQVELGSSYL QAPMNNDISA YPKEDVQFQY GTNALDINDF LDSVFVGSDE FSCEDSGQEL 360 ASHQIDTKNC SITGPMIKDS GSCSESEAEV TQRLAEPDFF DPEMLWGNYD QETAVKNEVN 420 SIAATMLEAR GAPYVSTDHA VGNSGFLQNT YPGHYGHPVS FGASQVPNFL KDGFNSVVSN 480 DSGSGTGIKL RSRPMHNQPD DMQSRPQGTA PRRIRLQMKM QVGPVECCTR PDSSQEAVSH 540 QAVTDGEKAS DEHNPTASDT THEEYEGVSG EVDDLSTRVK DADDSPVQES LDEPLKTVTK 600 LSSSSHIYMT KFLVVASLLV VFIGVWGCIR LYV

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence

MMAVLPGDNP IAAIPVDKQM GIPPLNSLPV GYRFRPTDEE LVNHYLRLKI NGADSQVSVI  60
REVDICKLEP WDLPDMSVVE SNDNEWFFFC PKDRKYQNGQ RLNRATERGY WKATGKDRNI  120
TTKKGAKIGM KKTLVYYIGR APEGKRTHWV IHEYRATEKS LDGSHPGQGA FVLCRLFRKS  180
DLKQDEHVEN SNLDAEQNAS AAKSPTEDEL SEGATPFTVV QPLGDGDKSY AATFPKTKLY  240
GKQIPVESHS HSCIADDTED QMLDITSIPA AQDLEKELGN FCDPSSQPLD WKIFSPLHSQ  300
LQVELGSSYL QAPMNNDISA YPKEDVQFQY GTNALDINDF LDSVFVGSDE FSCEDSGQEL  360
ASHQIDTKNC SITGPMIKDS GSCSESEAEV TQRLAEPDFF DPEMLWGNYD QETAVKNEVN  420
SIAATMLEAR GAPYVSTDHA VGNSGFLQNT YPGHYGHPVS FGASQVPNFL KDGFNSVVSN  480
DSGSGTGIKL RSRPMHNQPD DMQSRPQGTA PRRIRLQMKM QVGPVECCTR PDSSQEAVSH  540
QAVTDGEKAS DEHNPTASDT THEEYEGVSG EVDDLSTRVK DADDSPVQES LDEPLKTVTK  600
LSSSSHIYMT KFLVVASLLV VFIGVWGCIR LYV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	1e-87	NAC family protein