PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT52136.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C3H | ||||||||
Protein Properties | Length: 343aa MW: 39471.1 Da PI: 6.2476 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21 | 5.7e-07 | 113 | 133 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C +Gd C FaHg PHT52136.1 113 ACPDFRK-GNCTRGDGCEFAHG 133 7******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence |
MMIGERNRRH PTVDIPPWDD RTVNNKMQQF MEEEYSLFVH HDSDYDYYEE VDAFQDVEIP 60 VDVFACDNFR MYEFKVRRCT RGRSHDWTEC PYVHPGEKAR RRDPRKYHYS GTACPDFRKG 120 NCTRGDGCEF AHGVFECWLH PCRYRTQPCK DGGSCKRRVC FFAHSPEQLR VLSPGQGIES 180 RSDPRSEESS SPPTESPPMS PMTVSSVNSL SRSLGSNSVN EVMASLRQLQ LNRLNSMPSS 240 FNVQMNSPVF GSPRRVMTRP GYFSLPATPS GDLTRPGYRV FDIWEKGEYE EEPVMERVES 300 GRDLRVKMFE KLSKENPLDP VDPSPNSNPG QNPDVGWVSD LIQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-102 | C3H family protein |