PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT52022.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 485aa MW: 54598.5 Da PI: 5.2228

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT52022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.3	1.7e-10	339	365	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC+++ r+G+Ck+G++CkF H++ PHT52022.1 339 PGQPLCMYYCRYGICKFGSSCKFDHPM 365 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MAYAAITCLM RTIHQSMELT GCDLQPFYEK LECLRAILEK PWKATDDVEA LTILEAEITE 60 LAYSAEDMID LESRKPNILT TRNVELAEYA SSVKPPYHMR LMNFDESWSL SYEKVSAKDS 120 FPHEFEQLEK QIALKCRGLP LSVVVIGGLL SKIGKSLGDW QSVASNLRHL RLDWNYLRSH 180 EPTEKSLVLK NLQCFSGLNP REHYTFGFYS TISSAVSEGK VVISCRCVPL LLLPPSDAFP 240 QNPKSLALSG QFFLPWKDLS IVGKLPKLES LKLSYNACEG VEWEVADEDI SYCQESVVNS 300 ARQIQQDIQD SYGCSVEVHT RPVPPADCLL SPIGLPLRPG QPLCMYYCRY GICKFGSSCK 360 FDHPMQLSLP ESRKMPSGDN NIDIYPPITS QHHYFACTNS FEDAFQLVDL LKKGDLNSSN 420 MASNSFLGAG PLMFTGENYH MWIIKMKAYL KDHSLWEAVE SENDPPPLGP NPTVAQMKNY 480 EDAKS

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MAYAAITCLM RTIHQSMELT GCDLQPFYEK LECLRAILEK PWKATDDVEA LTILEAEITE  60
LAYSAEDMID LESRKPNILT TRNVELAEYA SSVKPPYHMR LMNFDESWSL SYEKVSAKDS  120
FPHEFEQLEK QIALKCRGLP LSVVVIGGLL SKIGKSLGDW QSVASNLRHL RLDWNYLRSH  180
EPTEKSLVLK NLQCFSGLNP REHYTFGFYS TISSAVSEGK VVISCRCVPL LLLPPSDAFP  240
QNPKSLALSG QFFLPWKDLS IVGKLPKLES LKLSYNACEG VEWEVADEDI SYCQESVVNS  300
ARQIQQDIQD SYGCSVEVHT RPVPPADCLL SPIGLPLRPG QPLCMYYCRY GICKFGSSCK  360
FDHPMQLSLP ESRKMPSGDN NIDIYPPITS QHHYFACTNS FEDAFQLVDL LKKGDLNSSN  420
MASNSFLGAG PLMFTGENYH MWIIKMKAYL KDHSLWEAVE SENDPPPLGP NPTVAQMKNY  480
EDAKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-19	C3H family protein