PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT51954.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 176aa MW: 20299.9 Da PI: 10.0502 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 31.2 | 2.8e-10 | 16 | 61 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 rie + nr+ tfskRr g+ KKA+E d++ + + s+ +k y PHT51954.1 16 RIEKNANRYSTFSKRRSGLYKKASEFVRENDVDLGIFLSSPADKAY 61 89***********************866666666666666666555 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 176 aa Download sequence |
MKRMKTTGRR KIPLVRIEKN ANRYSTFSKR RSGLYKKASE FVRENDVDLG IFLSSPADKA 60 YAFVHPTHNA IIDRFMNLKT DLSEQIIAEN SRNKVNQLND RLNELDKREE VGKERLLSLS 120 QRNKTRDKGQ WESIDHLNAD DVMKFQAWLD VGEIMLKDQL AKASSSSQSP SEDADI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-20 | M-type_MADS family protein |