PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT51944.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19260.9 Da    PI: 9.8928
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT51944.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.31.9e-081157349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                i+ +  r+ tfskRr g+ KKA+ L    +++  +++ s+ g+ y +
  PHT51944.1 11 IKKDVDRYSTFSKRRSGLYKKASKLVRENNVDLGIVLSSPAGNAYAF 57
                889999*****************998888888888888888877766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MGRQKIPLVK IKKDVDRYST FSKRRSGLYK KASKLVRENN VDLGIVLSSP AGNAYAFFHP  60
THNAVIDRFM NLKTNLGEQI VAENSLNKVN QPNGRLNELD KRGEVAKEKF ISLPQRIKTR  120
DKGRWESIDQ LNADDVMKFQ ALLDVEEIML KDQLPEASSS SQSPSEDSDI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-21M-type_MADS family protein