PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT50480.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 845aa MW: 94670 Da PI: 9.3368

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT50480.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.9e-07	169	189	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+f + G C++G+ C+F+H+ PHT50480.1 169 VCRDFPA-GKCRRGSDCRFIHP 189 5999999.*************9 PP
2	zf-CCCH	21.2	4.9e-07	252	274	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t Cr++ + GtC+ G++CkF+H+ PHT50480.1 252 TITCRNYVK-GTCRWGASCKFSHD 274 668****.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 845 aa Download sequence
MGESEKRRKS LWDAEEPNST NYEEWGAPKA DNLWQSKSRS DWLSGDNVTG TDELRKENYH 60 YKSMSPAFER RGRRSNSHSP DNGRTQPRRY SGRARSRSRS RSRGRGEGRS RSRSRGRDRF 120 RTSSRSRSRS RDRGSMRVQN RSRSPLHNYR RDSYASGDRR TGLRTSSQVC RDFPAGKCRR 180 GSDCRFIHPD AANHRGGGHS EDNVAERLGS RPERGHISRY TDSEGPGYQS RDRLPDVHHL 240 EDELHRNRSR GTITCRNYVK GTCRWGASCK FSHDGASGDN YDKGTRSASF DHGQDNPASR 300 SGKSLCEYFA AGKCYKDNCK FSHDASSRNH EIRHSDNTGG HRFNDKNNWL NAPKWDDEGR 360 TSDLVKASGW DETAPKKDTA VSVLTDRTNE RPGHSFENEN RAWGSTEPQF MNSDRQRAAS 420 PHRGSAGHLN TLNILESSVI QNFTNAQDIH LTSQASDLNM ERTSAHVLGH KSNQGSSGII 480 LSTIDTQPYG SGGSFVETQG LTDDSIARTL GSNVVNEFMN SRDSVHHVGL PGQSFSGTGI 540 GMKSEHSAVL NGAHQEPNVF LPIPSTGHNK REAPGTPEML EFKVPQNLSG TVTGEQVHQM 600 ETSPTSMIKK FEEGLREAQL QSVLNPSGPS GMLPSNPISS LVHALYGQTN PEMRVPDNYH 660 PPDGFELNTS VNLPNNSFHL DRDSNKAPME QMNQSYAVDP ELGNNDQIDE VKQQENKLVE 720 VNGKDKLALE ESKDGLENNH PGTMHMHAKI EEGSCNKDEK AMRLFKNALI EFVKEILKPT 780 WKEGKMSREV HKTVVKKAVD KVTSAMQAEQ VPKTQEKIDQ YLSYSKPKIA KLVQAYVERL 840 LKNEA

Sequence ? help Back to Top

Protein Sequence Length: 845 aa Download sequence

MGESEKRRKS LWDAEEPNST NYEEWGAPKA DNLWQSKSRS DWLSGDNVTG TDELRKENYH  60
YKSMSPAFER RGRRSNSHSP DNGRTQPRRY SGRARSRSRS RSRGRGEGRS RSRSRGRDRF  120
RTSSRSRSRS RDRGSMRVQN RSRSPLHNYR RDSYASGDRR TGLRTSSQVC RDFPAGKCRR  180
GSDCRFIHPD AANHRGGGHS EDNVAERLGS RPERGHISRY TDSEGPGYQS RDRLPDVHHL  240
EDELHRNRSR GTITCRNYVK GTCRWGASCK FSHDGASGDN YDKGTRSASF DHGQDNPASR  300
SGKSLCEYFA AGKCYKDNCK FSHDASSRNH EIRHSDNTGG HRFNDKNNWL NAPKWDDEGR  360
TSDLVKASGW DETAPKKDTA VSVLTDRTNE RPGHSFENEN RAWGSTEPQF MNSDRQRAAS  420
PHRGSAGHLN TLNILESSVI QNFTNAQDIH LTSQASDLNM ERTSAHVLGH KSNQGSSGII  480
LSTIDTQPYG SGGSFVETQG LTDDSIARTL GSNVVNEFMN SRDSVHHVGL PGQSFSGTGI  540
GMKSEHSAVL NGAHQEPNVF LPIPSTGHNK REAPGTPEML EFKVPQNLSG TVTGEQVHQM  600
ETSPTSMIKK FEEGLREAQL QSVLNPSGPS GMLPSNPISS LVHALYGQTN PEMRVPDNYH  660
PPDGFELNTS VNLPNNSFHL DRDSNKAPME QMNQSYAVDP ELGNNDQIDE VKQQENKLVE  720
VNGKDKLALE ESKDGLENNH PGTMHMHAKI EEGSCNKDEK AMRLFKNALI EFVKEILKPT  780
WKEGKMSREV HKTVVKKAVD KVTSAMQAEQ VPKTQEKIDQ YLSYSKPKIA KLVQAYVERL  840
LKNEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	101	RARSRSRSR
2	93	103	RARSRSRSRSR
3	95	103	RARSRSRSR
4	95	105	RARSRSRSRSR
5	97	105	RARSRSRSR
6	109	117	RARSRSRSR
7	109	119	RARSRSRSRSR
8	111	121	RARSRSRSRSR
9	125	133	RARSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	6e-15	C3H family protein