PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT49553.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 176aa MW: 20256.9 Da PI: 8.8972 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.9 | 4.8e-12 | 16 | 64 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +ie + r+ tfskRr g++KKA+ L d++ +++ s+t+k+y + PHT49553.1 16 KIEKDAHRYSTFSKRRSGLFKKASQLVRENDVDLGIVLTSPTDKVYAFV 64 59999*****************************************995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence |
MEGKKTTGRR KIPLVKIEKD AHRYSTFSKR RSGLFKKASQ LVRENDVDLG IVLTSPTDKV 60 YAFVHPTSNA VIDRFINLKT DFGDRFVAEN SRDKVNQLND RLNELDKREE IAKESLLALN 120 EMDKTREKNR WEFIDQLNAD EVMKFQAWLD VGEVMLKDQL PKASSSSQSP PEDANI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-22 | M-type_MADS family protein |