PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT47828.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 300aa MW: 33413.4 Da PI: 5.8301

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT47828.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.1	3.3e-39	10	110	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rr+C+++C+lapyfpa+qpk f+n+h+lFG+s++lk+lk+l+++++++am+s++y+A+ar + PvyG+v+ i++l ++ ++el+++++ PHT47828.1 10 ACAACKYQRRRCTPECPLAPYFPADQPKMFQNAHRLFGVSKILKILKHLDPSQKKIAMKSIIYQANARDKHPVYGCVAEIQNLLFSIQLCEEELQTVHA 108 7***********************************************************************************************998 PP DUF260 100 el 101 +l PHT47828.1 109 QL 110 85 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MTLKGGTSQA CAACKYQRRR CTPECPLAPY FPADQPKMFQ NAHRLFGVSK ILKILKHLDP 60 SQKKIAMKSI IYQANARDKH PVYGCVAEIQ NLLFSIQLCE EELQTVHAQL AFYRQQQQQQ 120 EISSTISDTV SQIQLGMPPP AIVAAPPPAN GNGLTLFHQD APSQYNVASN ATLPVQSYPS 180 YSNNSYAAFV DPKENNVVNS LWIQQSYGNS VCNNNTMIMQ SQLPASQTIV VPQEVTQDYD 240 DIHHPFFDTI DDRQSYIDSK EAYDSSSESS LKDTRQSVEH VADNELKNAA ACFSLTSINE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	3e-50	LBD family protein