PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT47535.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 419aa MW: 44762.1 Da PI: 7.7465

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT47535.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.6	6.5e-40	96	222	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + PHT47535.1 96 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrssyfnsn 194 789******************************************************************999877777777775555555555566666 PP TCP 89 ...........................k 89 + PHT47535.1 195 fslsqrrglfpgiglstdtsattllnfQ 222 6666666677777665544444444431 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MDGGGDDHLH QHHQHHHHHH HHRPIATFPF QLLEKKEDEA CSSSSNAGAA YTTALAISNI 60 DSAHTNPNST PRSTTSSASS LQITASGGTD ISKKPPPKRT STKDRHTKVD GRGRRIRMPA 120 LCAARVFQLT RELGHKSDGE TIEWLLQQAE PAVIAATGTG TIPANFTSLN ISLRSSGSSM 180 SVPSQLRSSY FNSNFSLSQR RGLFPGIGLS TDTSATTLLN FQSANLSPNM QLQTKPELRD 240 NSIDLTETSA ADDNLSRKRR SDLDLEQHHH HQQQHQMGNY LLQSSTGTMP TSHSSIPANF 300 WMVTNPIPTN QVMGGDPIWP FSSVNNSGAA AALYRGTMPS GLQFMNFPTP VALLPSQQLG 360 GGSGGGGSGN GNNGLGEGQL GMFAGLNPYR GGGGGVSESQ ASGSHSHHDD RHDTTSHHS

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MDGGGDDHLH QHHQHHHHHH HHRPIATFPF QLLEKKEDEA CSSSSNAGAA YTTALAISNI  60
DSAHTNPNST PRSTTSSASS LQITASGGTD ISKKPPPKRT STKDRHTKVD GRGRRIRMPA  120
LCAARVFQLT RELGHKSDGE TIEWLLQQAE PAVIAATGTG TIPANFTSLN ISLRSSGSSM  180
SVPSQLRSSY FNSNFSLSQR RGLFPGIGLS TDTSATTLLN FQSANLSPNM QLQTKPELRD  240
NSIDLTETSA ADDNLSRKRR SDLDLEQHHH HQQQHQMGNY LLQSSTGTMP TSHSSIPANF  300
WMVTNPIPTN QVMGGDPIWP FSSVNNSGAA AALYRGTMPS GLQFMNFPTP VALLPSQQLG  360
GGSGGGGSGN GNNGLGEGQL GMFAGLNPYR GGGGGVSESQ ASGSHSHHDD RHDTTSHHS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	256	261	SRKRRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	5e-52	TCP family protein