PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT46568.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 205aa MW: 22336.8 Da PI: 6.9982 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.9 | 1.7e-38 | 15 | 116 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+ dC++apyf +e+ p+kfa++hk+FGasnv+kll+++p ++r da+ +++yeA+ar++dPvyG+v+ i++lqqq++ l++++ ++k PHT46568.1 15 PCGACKFLRRKCVVDCIFAPYFNSEEgPSKFAAIHKVFGASNVSKLLHNVPVDDRCDAVVTIAYEAQARIKDPVYGCVANIFALQQQVAYLQSQVMQVK 113 7*********************998889*******************************************************************9999 PP DUF260 99 eel 101 ++l PHT46568.1 114 AQL 116 875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence |
MASSSSSVTG GTGSPCGACK FLRRKCVVDC IFAPYFNSEE GPSKFAAIHK VFGASNVSKL 60 LHNVPVDDRC DAVVTIAYEA QARIKDPVYG CVANIFALQQ QVAYLQSQVM QVKAQLAQSL 120 INNSNNSYNP QWIINNNNNN VASSGQMTTS SSFPANYPNY YINVKSNSSP QSSSMESADH 180 YSDGHGMSMQ DIHSLDQFLY QPYTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 9e-62 | LBD family protein |