PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT45628.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 180aa MW: 20607.5 Da PI: 9.7717 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40 | 5e-13 | 15 | 63 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie k r +fskRr+g+ KKA+EL d+++ +i+fs+ gk + + PHT45628.1 15 KKIEKKEDRFASFSKRRAGLYKKASELVAEFDVDIGIIMFSPGGKPHSF 63 689*****************************************98776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence |
MVNKKSKGRQ KIPMKKIEKK EDRFASFSKR RAGLYKKASE LVAEFDVDIG IIMFSPGGKP 60 HSFFHPTVDA IVSRFQNPDV QLSESTHLVA AYARKRVNQL ESRLEEFDIR EKAAITLTNQ 120 LDQMAKSRQK GWWESIEQLN ADEVAKFEAW LNATTFNMHN RLNQLENEAT ISLGCESFGV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 4e-27 | M-type_MADS family protein |