PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT3G04100.1 | ||||||||
Common Name | AGL57, T6K12.28 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 207aa MW: 24098.1 Da PI: 10.5185 | ||||||||
Description | AGAMOUS-like 57 | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54 | 2.1e-17 | 21 | 70 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k++en+ r +tfskR++gi+KK +EL +Cd+eva +ifs+ k y+++ AT3G04100.1 21 KKVENYGDRMITFSKRKTGIFKKMNELVAMCDVEVAFLIFSQPKKPYTFA 70 6789********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.57E-23 | 13 | 88 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.6E-21 | 13 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.086 | 13 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-16 | 15 | 35 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.4E-19 | 22 | 69 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-16 | 35 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-16 | 50 | 71 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0020093 | anatomy | antipodal cell | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 207 aa Download sequence Send to blast |
MSSTKQAKGR KTKGKQKIEM KKVENYGDRM ITFSKRKTGI FKKMNELVAM CDVEVAFLIF 60 SQPKKPYTFA HPSMKKVADR LKNPSRQEPL ERDDTRPLVE AYKKRRLHDL VKKMEALEEE 120 LAMDLEKLKL LKESRNEKKL DKMWWNFPSE GLSAKELQQR YQAMLELRDN LCDNMAHLRL 180 GKDCGGSSSV RVGRRVSGGV RLFDREA |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
Genevisible | 258583_at | 0.0 | ||||
Expression Atlas | AT3G04100 | - | ||||
AtGenExpress | AT3G04100 | - | ||||
ATTED-II | AT3G04100 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT3G04100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT3G04100 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | ATAC016829 | 0.0 | AC016829.7 Arabidopsis thaliana chromosome III BAC T6K12 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. | |||
GenBank | DQ056586 | 0.0 | DQ056586.1 Arabidopsis thaliana MADS-box family protein (At3g04100) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_187060.1 | 1e-152 | AGAMOUS-like 57 | ||||
TrEMBL | Q9M8W6 | 1e-150 | Q9M8W6_ARATH; AGAMOUS-like 57 | ||||
STRING | AT3G04100.1 | 1e-151 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 | Representative plant | OGRP16 | 17 | 761 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT3G04100.1 |
Entrez Gene | 819565 |
iHOP | AT3G04100 |
wikigenes | AT3G04100 |