PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT42666.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARF

Protein Properties

Length: 1111aa MW: 122666 Da PI: 6.5114

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT42666.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.1	5.9e-22	134	235	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++++l+ PHT42666.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQQLL 229 99***************************9545444.38*********************************************..5688889 PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ PHT42666.1 230 LGIRRA 235 ***997 PP
2	Auxin_resp	119.5	2.6e-39	260	343	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ PHT42666.1 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 343 79*****************************99879******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1111 aa Download sequence
MKTPANGAGV QQHTANGNPA EVEKKSINSE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV 60 AASMKKDVDA QIPNYPNLPS KLVCLLHNVT LHADPETDEV YAQMTLQPVP SFDKEALLRS 120 DLSMKANKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDYSMQPP AQELVARDLH 180 DNLWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT 240 NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKATYSSQVS 300 LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGERRNRVSI 360 WEIEPVTAPF FICPTPPFFR SKRPRLPGMP DDDCSDLDGM FKRTMPWLGD DFGMKDPQGL 420 PGLSLVQWMN MQQNPSLANS MQPNYLHSLS GSVLQNVGSG ADLSRQLGLP APQLPLQNTL 480 QFGSQRPTQQ GQQLDQLQKL PATTLTPAGS IMQSQQQLSD ISQQSRQSLI NQSVPTSHVQ 540 AQLLQVRSLV QSQNVLQHQQ SFQNQLQRNL TQNLPPQQQI MNQTQQQSFM PPQPSDPLNQ 600 TLHFSDSQLQ MQLLQKLHQQ QQSLLAQQSL LQQPSQLGPI QDQQKQLLDV SQNFSRSLAT 660 SQMLDMPQTT STSTSLSQPQ IAQQQMTTNN SQSNLCFAQP LKLQQQHQQQ PGILPELSGQ 720 VGQVLPPTTN QLSANCSSLL TGAAGGGQSV VTDDIPSCST SPSTNNCQNA VQPIMNDRIH 780 RGTVAADEAN QSSLPLLSSS GLEAISPNRN LVKDLQQKSD GKPSLNISKS QNHGFLTPQT 840 YLNTAVPQMD YLDSSSSATS VCFSQNDVQL QQTTNPMSFS SQPVVFRDSQ DGEVQGDPRN 900 NVAFGANMDN QLGISMMPDS LITNSLVGSR KDVSNNISSG GGMLSSYENP KDAQPELSSS 960 MVSQSFGVPD MAFNSIDSTI NDGSFMNRGA WAPPTQMPRM RTYTKVYKRG AVGRSIDITR 1020 YLGYEELKQD LARRFGIEGQ LEDRQRIGWK LVYVDHENDV LLVGDDPWEE FVNCVRCIKI 1080 LSPQEVQQMS LDGDFGNVQN QACSSSDGGN V

Sequence ? help Back to Top

Protein Sequence Length: 1111 aa Download sequence

MKTPANGAGV QQHTANGNPA EVEKKSINSE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLPS KLVCLLHNVT LHADPETDEV YAQMTLQPVP SFDKEALLRS  120
DLSMKANKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDYSMQPP AQELVARDLH  180
DNLWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKATYSSQVS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGERRNRVSI  360
WEIEPVTAPF FICPTPPFFR SKRPRLPGMP DDDCSDLDGM FKRTMPWLGD DFGMKDPQGL  420
PGLSLVQWMN MQQNPSLANS MQPNYLHSLS GSVLQNVGSG ADLSRQLGLP APQLPLQNTL  480
QFGSQRPTQQ GQQLDQLQKL PATTLTPAGS IMQSQQQLSD ISQQSRQSLI NQSVPTSHVQ  540
AQLLQVRSLV QSQNVLQHQQ SFQNQLQRNL TQNLPPQQQI MNQTQQQSFM PPQPSDPLNQ  600
TLHFSDSQLQ MQLLQKLHQQ QQSLLAQQSL LQQPSQLGPI QDQQKQLLDV SQNFSRSLAT  660
SQMLDMPQTT STSTSLSQPQ IAQQQMTTNN SQSNLCFAQP LKLQQQHQQQ PGILPELSGQ  720
VGQVLPPTTN QLSANCSSLL TGAAGGGQSV VTDDIPSCST SPSTNNCQNA VQPIMNDRIH  780
RGTVAADEAN QSSLPLLSSS GLEAISPNRN LVKDLQQKSD GKPSLNISKS QNHGFLTPQT  840
YLNTAVPQMD YLDSSSSATS VCFSQNDVQL QQTTNPMSFS SQPVVFRDSQ DGEVQGDPRN  900
NVAFGANMDN QLGISMMPDS LITNSLVGSR KDVSNNISSG GGMLSSYENP KDAQPELSSS  960
MVSQSFGVPD MAFNSIDSTI NDGSFMNRGA WAPPTQMPRM RTYTKVYKRG AVGRSIDITR  1020
YLGYEELKQD LARRFGIEGQ LEDRQRIGWK LVYVDHENDV LLVGDDPWEE FVNCVRCIKI  1080
LSPQEVQQMS LDGDFGNVQN QACSSSDGGN V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein