PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT42341.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 390aa MW: 40840.5 Da PI: 6.6505

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT42341.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.1e-12	207	252	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq PHT42341.1 207 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 252 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MQAMNSLLSE QHDDFLEQIL SSVPSNSSPW PEFSKSSWDP HHHHLSSPPP PPPPQNPNSV 60 DEQSPFIYDD QASSLLASKL RQHQINGGGG SAAAAAAAKA IMLQQQQLLL SRTLAGNGDN 120 DGGVNDSSVQ ALFNGFTGSL GQTSNQSHHF HLPQGGAMNS QSFGAPVASP AMNQTPAASG 180 SAGTTPAPAQ PKQQRVRARR GQATDPHSIA ERLRRERIAE RMKALQELVP NANKTDKASM 240 LDEIIDYVKF LQLQVKVLSM SRLGGAAAVA PLVADMSSEG GRGNGNVTAS SSNNDTMTVT 300 EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS LATAISTATC HSRNPPMIPN GVNNTNGGGG 360 PTSPSLSALT VQSATLVGNA VKDSTSVSEA

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MQAMNSLLSE QHDDFLEQIL SSVPSNSSPW PEFSKSSWDP HHHHLSSPPP PPPPQNPNSV  60
DEQSPFIYDD QASSLLASKL RQHQINGGGG SAAAAAAAKA IMLQQQQLLL SRTLAGNGDN  120
DGGVNDSSVQ ALFNGFTGSL GQTSNQSHHF HLPQGGAMNS QSFGAPVASP AMNQTPAASG  180
SAGTTPAPAQ PKQQRVRARR GQATDPHSIA ERLRRERIAE RMKALQELVP NANKTDKASM  240
LDEIIDYVKF LQLQVKVLSM SRLGGAAAVA PLVADMSSEG GRGNGNVTAS SSNNDTMTVT  300
EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS LATAISTATC HSRNPPMIPN GVNNTNGGGG  360
PTSPSLSALT VQSATLVGNA VKDSTSVSEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	212	217	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-73	bHLH family protein