PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT41444.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 259aa MW: 29459.4 Da PI: 7.567 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.1 | 4.6e-18 | 10 | 51 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+ PHT41444.1 10 FITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPY 51 89**************************************85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence |
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIIYSP YDNSPEVWPN 60 TMGAQRVLAE FKRMPEMEQS KKMMNQESFL RQRIAKANEQ LKKQSKENRE KEMTEIMYQG 120 LTGKGLQHLN LGDLNDLGWV IDQNLKEIYK RIEAVKKGAS TSSSAAAAKS HAVVAPPVEQ 180 EPAVVELGLD GMQRTQAEWV TDWMNSNTSD QQIGAEWFTD WMNSNTSDQQ IDFGHGDEMI 240 LPNYNDNHSA NMWPNDFYP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVKLAFITNDSARKATFKKRK |
2 | 22 | 26 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 7e-66 | M-type_MADS family protein |