PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT40961.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 461aa MW: 50807.4 Da PI: 5.086

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT40961.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.4	1.2e-13	285	332	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h e+Er+RR+++Ns+f Lr+++P+ +++Ka+ L Av YI++L+ PHT40961.1 285 MNHVEAERQRREKLNSRFYALRSVVPNV-----SRMDKASLLSDAVSYINQLK 332 589**********************6.....4***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MEQLMVSSSP MAPASLPPSL PADINQLPLG LQQMLQYVVK SQPEWWAYAI FWQTSNDDEG 60 KAFLAWGDGY FQESCAGSNN KGSGSSLHSQ AQTERKKVIR GIQALMDGNG DNSPVDDVDV 120 TDPEWFYVMS LAGSFSAFDG TVLGKALSSG VFLWLTGSAQ FEAFNTCERA KEAQIHGIQT 180 LVCIPTTNGV LELGSTHLIK QSLTLVQQVE NLFLCCPSVQ FLEETICFAD IGLVTGLQQG 240 DYNEEKFVEN RQKQQLPDSG KLKTVAKKRG RKPKGFVEDV NMVAMNHVEA ERQRREKLNS 300 RFYALRSVVP NVSRMDKASL LSDAVSYINQ LKARVDELES QLIDSNNKKL KIITESSSAD 360 NQSTTTSPDD QVVIKANSTA APAEVEVKIV GTDAMIRVQS ENVDYPSAKL MNALQHLQMQ 420 VHHASISTVN NLAIHDVVVR IPQGLSTEDE LRTALLSRLE H

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MEQLMVSSSP MAPASLPPSL PADINQLPLG LQQMLQYVVK SQPEWWAYAI FWQTSNDDEG  60
KAFLAWGDGY FQESCAGSNN KGSGSSLHSQ AQTERKKVIR GIQALMDGNG DNSPVDDVDV  120
TDPEWFYVMS LAGSFSAFDG TVLGKALSSG VFLWLTGSAQ FEAFNTCERA KEAQIHGIQT  180
LVCIPTTNGV LELGSTHLIK QSLTLVQQVE NLFLCCPSVQ FLEETICFAD IGLVTGLQQG  240
DYNEEKFVEN RQKQQLPDSG KLKTVAKKRG RKPKGFVEDV NMVAMNHVEA ERQRREKLNS  300
RFYALRSVVP NVSRMDKASL LSDAVSYINQ LKARVDELES QLIDSNNKKL KIITESSSAD  360
NQSTTTSPDD QVVIKANSTA APAEVEVKIV GTDAMIRVQS ENVDYPSAKL MNALQHLQMQ  420
VHHASISTVN NLAIHDVVVR IPQGLSTEDE LRTALLSRLE H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	1e-79	bHLH family protein